Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0795 ATGGCAGAGAGGGAGAGAGTGAATAGCAAAGCTTCAACACCTCTGTTTTCTGGACTAAAAAACAGAGGGGTAGGCAGAAGGAAAGAGAGGGCGTCAGAAAAGAGCTTGGAAGATGAGACAGTAGATGCCAAATCAAAGTCTAAATCTAAGAAACCTCATACGAAGCTTGCTGTGAATAAGAAAGGTAGTGCCACTACCAAAGTGGGGGGTAGATTGAGTAAGGGCATGGCAGCCAAAGATCCTAACAAGCTAAAGAGACCACCTGGTGCCTTCTTCGTCTTCATGGAGGAATTTAGGAAGCAATTCAACAAAGAACATCCTAAAATTGGCAAAGCTGCTAGGGCAAAATGGAAGTCTATGTTTGACGTTGAGAAAGCACCATATGCAGCAACAGTAGAGAAGTGA 405 0.4395 MAERERVNSKASTPLFSGLKNRGVGRRKERASEKSLEDETVDAKSKSKSKKPHTKLAVNKKGSATTKVGGRLSKGMAAKDPNKLKRPPGAFFVFMEEFRKQFNKEHPKIGKAARAKWKSMFDVEKAPYAATVEK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0795 134 MobiDBLite consensus disorder prediction 1 84 - -
Dere06g0795 134 SUPERFAMILY HMG-box 73 133 IPR036910 -
Dere06g0795 134 Gene3D High mobility group box domain 69 134 IPR036910 -
Dere06g0795 134 Pfam HMG (high mobility group) box 85 133 IPR009071 -
Dere06g0795 134 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 44 134 IPR031061 -
Dere06g0795 134 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 84 134 IPR009071 -
Dere06g0795 134 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0795 Dere-ChrDere06 13875914 13876748 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere06g0795 HMG_box 9.2e-09 CL0114