Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0660 ATGGAAGAGGGTAGTTGTAATGGGACTTCATGTGTGATGGGTTTTGGGGATAACAGTAACAGTAGTAGTAGTGGGTTATGTGCTCCTCAGCCAATGATGATGATGATGCCTTTTGTGACTACATCTCATCATGCTCCCCATTCAAGTCCATTCAATACTAATCCTATGAATAATGCACCCACAAACAGTAGTCCCTTCCTTCCTATGAATCCTTGCGCTAGTATTACTACTACTCATCAATCCCAAAACCACAACATCATCCCCAACAGTTCTGGGCCAGCCTCTTTTTTCATGGACGACAACAACAACAACAACAACGCTAGCTCTTCTTCCTCTTCATCTGCCAAAGCAAGGATCATGGCTCATCCTCACTATCATCGTCTCTTGGCAGCCTACGTTAATTGTCAAAAGGTTGGAGCGCCGCCACAGGTGGTGGCGAGGTTAGAAGAAGCTTGTGCATCTGCGATGACAATGGCCGGCGGCGGCGGGTCCGGCTGCATCGGAGAAGATCCGGCGCTGGATCAGTTCATGGAGGCATATTGTGAGATGCTGACCAAGTATGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCTATGCATTTCCTTCATACTATAGAGTCTCAGTTCAAAGCTCTCACTCTTTCTTCTTCTTCAGACTTCGCTTATCCTGGGGCTACTGATCGGAATGGATCGTCAGAAGAAGATGCTGATGTCCTGAACATTATCAACCCACTTGCAGAGGACCGAGAACTGAAGGGCCAACTTCTGCGCAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGGAAGCTGCCCAAAGAAGCAAGGCAACAGCTACTTGATTGGTGGAGCAGACATTATAAATGGCCTTACCCATCTGAGTCTCAGAAGCTGGCTCTTGCAGAATCAACAGGTCTGGATCAGAAGCAAATAAACAATTGGTTCATTAACCAAAGGAAGCGTCATTGGAAGCCTTCAGAGGACATGCAGTTCATGGTGGTGGATCCATCTCATCCTCATCATCATCACTATTACATGGACAATGTTCTTGGGAATCCCTATCCCATGATCTAA 1098 0.4663 MEEGSCNGTSCVMGFGDNSNSSSSGLCAPQPMMMMMPFVTTSHHAPHSSPFNTNPMNNAPTNSSPFLPMNPCASITTTHQSQNHNIIPNSSGPASFFMDDNNNNNNASSSSSSSAKARIMAHPHYHRLLAAYVNCQKVGAPPQVVARLEEACASAMTMAGGGGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMHFLHTIESQFKALTLSSSSDFAYPGATDRNGSSEEDADVLNIINPLAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHHHYYMDNVLGNPYPMI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0660 365 SUPERFAMILY Homeodomain-like 272 348 IPR009057 -
Dere06g0660 365 Gene3D - 275 337 - -
Dere06g0660 365 Pfam KNOX2 domain 166 213 IPR005541 GO:0003677|GO:0005634
Dere06g0660 365 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Dere06g0660 365 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Dere06g0660 365 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Dere06g0660 365 SMART ELK_2 250 271 IPR005539 GO:0003677
Dere06g0660 365 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 64 339 - -
Dere06g0660 365 Pfam ELK domain 250 271 IPR005539 GO:0003677
Dere06g0660 365 SMART HOX_1 272 337 IPR001356 GO:0003677
Dere06g0660 365 SMART KNOX2_2 163 214 IPR005541 GO:0003677|GO:0005634
Dere06g0660 365 FunFam Homeobox protein knotted-1-like 2 275 337 - -
Dere06g0660 365 SMART KNOX1_2 113 157 IPR005540 GO:0003677|GO:0005634
Dere06g0660 365 MobiDBLite consensus disorder prediction 90 115 - -
Dere06g0660 365 Pfam KNOX1 domain 116 153 IPR005540 GO:0003677|GO:0005634
Dere06g0660 365 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Dere06g0660 365 CDD homeodomain 282 334 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0660 Dere-ChrDere06 10804925 10810234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0660 115 364 Homeobox Transcription Factor Family AT1G62360 80.469 7.76e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere06g0660 KNOX2 5.5e-22 No_clan