LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere06g0652	ATGACCACAAAACCAAACATAAAATTCTTGGTTTTCCTTTTCTTTCTGACTGTGATTCTCAGAGCCGAAGCTAACTGTAGGTCCGGTTGCAAGCTTGCTTTAGCTTCGTATTACGTCTGGGACGGCACAAATCTCACATACATTAGCAAAATCTTCGGCCACAATATCGCTGAAATTCTCAAATACAATCCAGCAATCTTGAACCCCGATTTTGTTCCGAGCCAGACCCGAATCAACGTGCCGTTCTCGTGCGAATGCTTGAACGGCGTCTTCTTAGGTCACACTTTCTCTTACACAACCCAACCTAGCGATACGTACCATAATATTGCTCGGATTGCTTTTTCTAACCTTACGACCGACGAATGGGTGGAGAGGGTGAACATGTATGAACCTACAGAGATACCGAACGGCGTTGAGATTAACGTCACCGTCAATTGCTCGTGCGGCGACAGTCACGTGTCGAGGGATTATGGACTGTTTTTGACGTACCCGCTTCGGCCCGGTGATAACTTGCCGGAAGTTGCGGCGGCGGCCGGCGTGTCGGCGGAGGTCGTACAGAGGTATAATCCCACCTCCGATTTCAGCGCCGGGAGTGGGCTGGTGTTTGTGCCGGCGAAAGATGATAAAGGAAGCTTTTTACCTCTGCAGCTGAGATCAGGTGAGTGGACATTATGCGCACCGTTTTACTGATTATCTGGGGGAGCCATTGCTGGAATCACTGTTGGAGCTGTTGCTGGGGCTTTGCTATTGGTACTTGTCCTGTATGTTGCTCTATACAGAAGAAGGAAAGTGGCAGAGGTGTCCCTTCTACCTGGAGCATCTGAAGATCACTTTCTTCAAACCGGACAAGGTTCTGGACATAGCTTGGAGAAGGTGTCAGAATCTGTTGATGCTGCTTCTCCAAGGTTGACAGGAATCACAGTGGACAAGTCAGTGGAGTTCTCATATGAGGAGCTTGCCAAAGCTACTGATGGTTTTTGTATAGCTAAGAAGATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCAGAGCTACGAAATGAGAAAGCTGCAATTAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCAGAGCTTAAGGTTCTCACACACGTCCACCACTTGAACTTGGTACGCTTAATAGGATATTGTGTTGAGAGCTCCTTATTTTTGGTCTATGAATACATTGAGAATGGAAATTTAAGTCAACATTTACGTGGCTCAGGAAGAGAAACCTTATCATGGCCAGCTAGAATTCAAATTGCCTTGGATGCAGCAAGAGGACTCGAATACATCCACGAGCATACAGTTCCTGTCTACATTCATCGAGACATTAAATCTGCAAACATTTTGATTGATAAGAATTTTCGTGGAAAGGTTGCAGATTTTGGTCTGGCAAAACTTACTGAATATGGAAGTTATTCACTGCAAACAAGACTTGTGGGTACATTTGGCTATATCCCTCCAGAATATGCACAATACGGTGACGTTTCCCCCAAGATAGATGTATATGCTTTTGGAGTAGTCATGTACGAACTGATATCAGCCAAGGAAGCTATTGTGAAGACAAACGAGCCTGAGAATGAATCAAAAGGACTAGTTGCCTTGTTTGAAGAGGTTCCAAGGCAGCCAGATCAGAAAGATGATCTTCGCAAACTTGTTGATCCTAGGCTTGGTGACAACTACCCTCTTGAATCAGTATATAAGATGTCTCAGCTTGCCAAAGCTTGCACACATGAGAATCCTCAATTAAGGCCAAGCATGAGATCAATTGTAGTTGCACTAATGACACTTTCTTCTCCAACTGAGGACTGGGATGTTGGCTCCATCTATGAAAACCAAGCTATGATGCATCTAATGGCAGGAAGGTAG	1875	0.4485	MTTKPNIKFLVFLFFLTVILRAEANCRSGCKLALASYYVWDGTNLTYISKIFGHNIAEILKYNPAILNPDFVPSQTRINVPFSCECLNGVFLGHTFSYTTQPSDTYHNIARIAFSNLTTDEWVERVNMYEPTEIPNGVEINVTVNCSCGDSHVSRDYGLFLTYPLRPGDNLPEVAAAAGVSAEVVQRYNPTSDFSAGSGLVFVPAKDDKGSFLPLQLRSGEWTLCAPFYXLSGGAIAGITVGAVAGALLLVLVLYVALYRRRKVAEVSLLPGASEDHFLQTGQGSGHSLEKVSESVDAASPRLTGITVDKSVEFSYEELAKATDGFCIAKKIGQGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVESSLFLVYEYIENGNLSQHLRGSGRETLSWPARIQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLAKLTEYGSYSLQTRLVGTFGYIPPEYAQYGDVSPKIDVYAFGVVMYELISAKEAIVKTNEPENESKGLVALFEEVPRQPDQKDDLRKLVDPRLGDNYPLESVYKMSQLAKACTHENPQLRPSMRSIVVALMTLSSPTEDWDVGSIYENQAMMHLMAGR	624

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere06g0652	624	Pfam	Protein tyrosine and serine/threonine kinase	328	595	IPR001245	GO:0004672\|GO:0006468
	Dere06g0652	624	CDD	STKc_IRAK	332	593	-	-
	Dere06g0652	624	Gene3D	Transferase(Phosphotransferase) domain 1	397	606	-	-
	Dere06g0652	624	FunFam	PTI1-like tyrosine-protein kinase 3	397	610	-	-
	Dere06g0652	624	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	9	610	IPR044812	GO:0019199\|GO:0045087
	Dere06g0652	624	SUPERFAMILY	Protein kinase-like (PK-like)	305	596	IPR011009	-
	Dere06g0652	624	ProSitePatterns	Protein kinases ATP-binding region signature.	332	354	IPR017441	GO:0005524
	Dere06g0652	624	Gene3D	Phosphorylase Kinase; domain 1	311	396	-	-
	Dere06g0652	624	FunFam	LysM receptor kinase 2	305	396	-	-
	Dere06g0652	624	ProSiteProfiles	Protein kinase domain profile.	326	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere06g0652	624	SMART	serkin_6	326	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere06g0652	624	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	441	453	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere06g0652	Dere-ChrDere06	10724771	10734391	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere06g0652	9	624	Receptor kinase-like Gene Family	AT3G21630	55.255	0.0	675

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Dere06g0652		PK_Tyr_Ser-Thr	2.8e-47	CL0016