Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0613 ATGAGCAAATCAACTCATTCAAGCAATATTAAAGCCAATGGTCAAGGTCAAGAGACAAGAGCTGAGGATACAAAGCTGGAATTCTCCGAAGATGAGGAGGCACTCATTGCCAGAATGTTCAGATTGGTTGGACAGAGGTGGTCTCTGATTGCTGGGAGAATCCCAGGAAGGACTGCAGAAGAGATTGAGAAGTATTGGACTTCAAAGGGCTCCTCATGA 219 0.4521 MSKSTHSSNIKANGQGQETRAEDTKLEFSEDEEALIARMFRLVGQRWSLIAGRIPGRTAEEIEKYWTSKGSS 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0613 72 MobiDBLite consensus disorder prediction 1 26 - -
Dere06g0613 72 SMART sant 24 72 IPR001005 -
Dere06g0613 72 FunFam MYB-like transcription factor 27 69 - -
Dere06g0613 72 MobiDBLite consensus disorder prediction 1 17 - -
Dere06g0613 72 Gene3D - 27 69 - -
Dere06g0613 72 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 72 IPR017930 -
Dere06g0613 72 SUPERFAMILY Homeodomain-like 27 68 IPR009057 -
Dere06g0613 72 CDD SANT 27 66 IPR001005 -
Dere06g0613 72 Pfam Myb-like DNA-binding domain 27 66 IPR001005 -
Dere06g0613 72 ProSiteProfiles Myb-like domain profile. 20 66 IPR001005 -
Dere06g0613 72 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 26 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0613 Dere-ChrDere06 10235623 10236173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0613 28 71 MYB Transcription Factor Family AT5G14750 52.273 1.80e-13 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere06g0613 Myb_DNA-binding 3.5e-09 CL0123