Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0597 ATGACAGAGATTGATCGTTTTGGAGGCCCAATCCAATCGCAGGCCACAAGGGAAGCCCATTGTTTTTGCCTCTCTTTATATTTCACGCCACGGTACCTCTTCTTTCTCTTTCTCGTTCGCTCTCTCTCTAGAATTCCAGATTTCTTCCTCAAGATGATGCAGCCTGGACCTGGAATGGCTCCCCCAAACATGGGTCAACAGCCTAACCAGCAGTACCAGCAGCAGCAACCCTACATGATGATGCCGCCTCAGGCTCAGGCGCCGCCGATGTGGGCTCCGTCAGCCCAGCCTCCGCCGCAGCAGTCGGTTCCTCCGCCGCAACCGACCCAACACGTCCAGCCGGCGAGCGCCGATGAGGTCCGTACTCTTTGGATCGGTGATTTGCAGTACTGGATGGACGAGAACTATCTATATACTTGTTTCGCGCATACCGGCGAGGTGGCTTCTGTGAAAGTCATTCGGAATAAGCAAACTAATCAATCAGAAGGTTATGGGTTTATTGAGTTTTTCACTCGTGCTGCTGCGGAGAGAATTCTTCAAACATATAATGGTACAATTATGCCAAATGGGGGGCAAAGCTTCAGATTGAACTGGGCAACCTTTAGTGCGGGAGAGAGGCGTCACGATGACACTCCAGATTACACAATTTTTGTTGGAGACTTGGCTGCAGATGTTACAGATTACTTGCTGCAGGAGACATTTAGGAACCGATATCCCTCAGTTAAGGGTGCAAAAGTTGTGATTGATAGGCTCACTGGGCGGACCAAGGGTTATGGTTTTGTAAAGTTTGGAGATGAGAGTGAACAAATATCGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCGACAAGGCCCATGCGAATTGGACCAGCTACAAACAAAAACCTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGATCACAGAACGAGAATGATCCCAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAACGTTACAGATGATCATCTGAGGCAAGTTTTTGGCCAGTATGGAGAGTTAATACATGTTAAGATTCCAGCGGGCAAGAGATGTGGATTCGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCTCTGCGGATGTTAAATGGAACGCTGTTAGGTGGACAAAATGTCCGTCTTTCGTGGGGCCGTAGTCCTTCAAACAAGCAGGCTCAGCCAGATCCAAACCAATATGGTGGATATTATGGCTATGCTCAGGGGTATGAGAATTATGGATACCCTCCTGCTGCTTCACAGGATCCCAACATGTATGGCAGCTATCCAGGGTATGCGAATTACCAGCCACCACAACAGCAGCAGCAAATGGGATATAGCTAA 1356 0.4816 MTEIDRFGGPIQSQATREAHCFCLSLYFTPRYLFFLFLVRSLSRIPDFFLKMMQPGPGMAPPNMGQQPNQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPQQSVPPPQPTQHVQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTNQSEGYGFIEFFTRAAAERILQTYNGTIMPNGGQSFRLNWATFSAGERRHDDTPDYTIFVGDLAADVTDYLLQETFRNRYPSVKGAKVVIDRLTGRTKGYGFVKFGDESEQISAMTEMQGVLCSTRPMRIGPATNKNLGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELIHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQYGGYYGYAQGYENYGYPPAASQDPNMYGSYPGYANYQPPQQQQQMGYS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0597 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 293 IPR000504 GO:0003723
Dere06g0597 451 MobiDBLite consensus disorder prediction 83 115 - -
Dere06g0597 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 391 IPR000504 GO:0003723
Dere06g0597 451 Gene3D - 296 400 IPR012677 -
Dere06g0597 451 SMART rrm1_1 215 289 IPR000504 GO:0003723
Dere06g0597 451 SMART rrm1_1 122 197 IPR000504 GO:0003723
Dere06g0597 451 SMART rrm1_1 320 387 IPR000504 GO:0003723
Dere06g0597 451 Gene3D - 59 208 IPR012677 -
Dere06g0597 451 SUPERFAMILY RNA-binding domain, RBD 304 417 IPR035979 GO:0003676
Dere06g0597 451 MobiDBLite consensus disorder prediction 293 319 - -
Dere06g0597 451 SUPERFAMILY RNA-binding domain, RBD 208 309 IPR035979 GO:0003676
Dere06g0597 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 384 IPR000504 GO:0003723
Dere06g0597 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 188 IPR000504 GO:0003723
Dere06g0597 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Dere06g0597 451 Gene3D - 213 289 IPR012677 -
Dere06g0597 451 FunFam Polyadenylate-binding protein RBP45C 298 421 - -
Dere06g0597 451 SUPERFAMILY RNA-binding domain, RBD 99 200 IPR035979 GO:0003676
Dere06g0597 451 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 111 404 - -
Dere06g0597 451 CDD RRM1_SECp43_like 122 202 - -
Dere06g0597 451 FunFam Polyadenylate-binding protein RBP45C 206 297 - -
Dere06g0597 451 FunFam Polyadenylate-binding protein RBP45 61 205 - -
Dere06g0597 451 CDD RRM2_SECp43_like 213 292 - -
Dere06g0597 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 201 IPR000504 GO:0003723
Dere06g0597 451 MobiDBLite consensus disorder prediction 437 451 - -
Dere06g0597 451 MobiDBLite consensus disorder prediction 430 451 - -
Dere06g0597 451 MobiDBLite consensus disorder prediction 83 111 - -
Dere06g0597 451 MobiDBLite consensus disorder prediction 289 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0597 Dere-ChrDere06 10032045 10036456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0597 92 398 Eukaryotic Initiation Factors Gene Family AT1G22760 27.885 1.84e-27 113