Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0589 ATGGTGGCGGAGAAAAACCCTGATCCATTTCTCACCGCATCGAGGTTGTTACTTTCCCGTGAAAACCCCAGGCCCCTGGGTTTTCCGACTGGGCGAGTAGTCCCTTCGGCCACTGCAAAACCCATGCCCAATGAGATCGCTCAGAAGCCTCTTGTTCCTTCGATATCGGAACGGTTCAAGGTTCTGCTCAAGCAACGCGATGATGAACGAAGGGCTTCTTCCGACGACGATGTGCCCCCACCGTCCACGGAAGAGATTGTGCAGCTTTATGAGATAGTATTGTCGGAGCTTACCTTAAATTTGAAGCCCATCATCACCGAACTTACCATCATTGCAGGAGACCAGAGGGAGCATGGCAAGGGTATAGCTTATGCAATTTGCGATCGAATTCTCGAGGTGTCTGTGGAGCAAAAGCTTCCTTCACTTTATCTTTTGGACAGTATTGTGAAGAATATTGGTGGAGAATACGTTAGATATTTCTCCTCACGTCTTCCTGAAGTCTTCTGTGAGGCATATAGGCAAGTTCAGCCTAATTTGCATAATGCTATGCGTCATCTCTTTGGCACCTGGTCAGCAGTCTTTCCACCTTCTGTCCTTCAGAAGATTAAAGCACAGCTGCAATTTTCTCAAACAGTTAATAATCAGAATCTGTCATCCAGCATTAATCCCCCAAGGGCATCTGAAGCTATGCGACGAACTCATGGCATTCATGTTAATCCAAAATACTTGCGGCAGTTGGAAAACTCAACTATGGATAGTGATGGAGGTGAAATGTTGAATCCAAAAGGAAGCATGGGTCATACAAATTTTGGACTTGGAGCTAATAAGATGCATCAAGCTTCAATTAGCAGGCATGGAAGAGTTTCTTCACCTTCAGGAATTGGACTTGATAGGTCTTTGTCAGCATCTATTGATGAATATGCAGTTGACAATTCTATTGGCAGGATAGTTGAGAGAGATTCACCTTCTCATCCCGCATTTAATTATGGAGTCGGTAAATCAATTGTTAGAGATGAAGAGTTGATTGAGTGGCAGCGAAAACAGTATTCTGGTGATGGTCAGAGTCAATTTCAATTTTCTTCGAATGGACATCAACGCCAAAGTCCAAGAGCTTTAATTGATGCTTATGGCAGTGACAAAAGCACAGAAACTTCAAGCAGTAAGCCGTTGGTTGAACTGCTTGACATAAATGGTATAGACAACAAGATGGTGTCAACATCGTGGCAGAATACTGAAGAGGAGGAGTTTAATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGGAGGAATAGCAGTATCTTGCCATCATCGGTTATTTTATCCAGGGAAAGACCTACTGGTTGGTCTAGTCGATCTCAGCTTCCTCCAGTTAATGATCCTTCTGTTATAGCAGAAGATGCATTTGTCCCATCGGGTCATAGTCGTAGGTCACTGGGTCAGATATCTGGATTCCAAAATCACTTAAATCAGAGTCTGGTCGCCCGTCGTTCTCCTCATGATTCCTGGAAGATTCCGCATCATTCATCTAATACTTTGCCACACCTCATTAATGTTAGAGGTCGAGCAAGGAATGATCATATATCTCCTATTGACAGCATTCCAGTCACTGAAGTAAACCTGTATGGGATTGAGGCTCGTCCTCCAGTTTTACCAGCATCTTTTCGAGCAAGGCCCCCTGTAAATGTGCACGCTACTCGTCCACCTTCCTTAAATCCTACTTTTCCATTGCAAAAACATGTTAGGAGTCAGTTTGGAGCAATAAATGCTAGTAACACCATTGTAAATCAAGGTGCAAATAAATCTTCATTAATGTCTGAACGGCTTTTGGACAGTGTTGAGAGCAATAATATTAGTAAAGTACAAATTCCCCAGATTCCTAATCAACTATCGGGACTAGTTTCATTAAACCAGCAAAACCGTGGACAAGTATCACAGCCTCAAAATTTTCCATCCCAGGACGTGCGAGAAAGTTTGGTTGAATCACATGCTCCAACAGCTTCCCAATTTAGTGGTGGGAGCTCTTTGCATGGACATGGTGCTGCTATAAGTGCAACCGTGTCAAGTTCATTACCTGTTGGACAGTTTCCTTTACCAGTCCAAAACATAGCAAACAATTCTATTCATTTACAGGGGGGAGCCTTGACCCCTTTATTTCCTGGTCCTCCTCCTGCTTCATCACAGATGATGCCTCATACAAGTGATAGTCTGTATGCATCGAGCCAGCAGCCAGCGGGTGCATTTTCTGGTTTGATCAATTCGCTTGTGGCCCAAGGTTTGATCTCATTGACTGAACAACCTCCTGTACAGGATTCTGTTGGAACTGAGTTTAATCCAGATGTTTTAAAGATTCGTCATGAGTCTGCAATTAGTGCTTTATATGCTGACCTCCCTAGACAATGCACAACTTGTGGCCTCCGATTCAAGTGTCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAACCGAATGTCTAAAAGTCGTAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGAGAGAATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAAGCAGTACCTGGTTTTTTGCCTACTGAGACCATAGAGGAAAAGAAAGATGATGAAGAGATGGCTGTGCCGGCTGATGAAGACCAGAATACGTGTGCATTGTGTGGAGAGCCTTTTGATGAGTTTTACAGTGACGAAACTGAGGAATGGATGTATAGAGGAGCTGTATTCCTAAATGCACCAAAGGGAACAGCAGCAGGAGCAGATAGGTCGCAGTTAGGTCCCATTGTTCATGCTAAATGCAGATCTGAATCTAGTACGGTCCCCCTTGAAGAATTTGGGCAGGATGAAGGGGGTACTAATGAAGAGGGTAGTCAAAGAAAACGGATGCGGAGTTGA 2904 0.4401 MVAEKNPDPFLTASRLLLSRENPRPLGFPTGRVVPSATAKPMPNEIAQKPLVPSISERFKVLLKQRDDERRASSDDDVPPPSTEEIVQLYEIVLSELTLNLKPIITELTIIAGDQREHGKGIAYAICDRILEVSVEQKLPSLYLLDSIVKNIGGEYVRYFSSRLPEVFCEAYRQVQPNLHNAMRHLFGTWSAVFPPSVLQKIKAQLQFSQTVNNQNLSSSINPPRASEAMRRTHGIHVNPKYLRQLENSTMDSDGGEMLNPKGSMGHTNFGLGANKMHQASISRHGRVSSPSGIGLDRSLSASIDEYAVDNSIGRIVERDSPSHPAFNYGVGKSIVRDEELIEWQRKQYSGDGQSQFQFSSNGHQRQSPRALIDAYGSDKSTETSSSKPLVELLDINGIDNKMVSTSWQNTEEEEFNWEDMSPTLVDHRRNSSILPSSVILSRERPTGWSSRSQLPPVNDPSVIAEDAFVPSGHSRRSLGQISGFQNHLNQSLVARRSPHDSWKIPHHSSNTLPHLINVRGRARNDHISPIDSIPVTEVNLYGIEARPPVLPASFRARPPVNVHATRPPSLNPTFPLQKHVRSQFGAINASNTIVNQGANKSSLMSERLLDSVESNNISKVQIPQIPNQLSGLVSLNQQNRGQVSQPQNFPSQDVRESLVESHAPTASQFSGGSSLHGHGAAISATVSSSLPVGQFPLPVQNIANNSIHLQGGALTPLFPGPPPASSQMMPHTSDSLYASSQQPAGAFSGLINSLVAQGLISLTEQPPVQDSVGTEFNPDVLKIRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSERMWLSGAEALGTEAVPGFLPTETIEEKKDDEEMAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVFLNAPKGTAAGADRSQLGPIVHAKCRSESSTVPLEEFGQDEGGTNEEGSQRKRMRS 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0589 967 MobiDBLite consensus disorder prediction 640 656 - -
Dere06g0589 967 ProSitePatterns Zinc finger C2H2 type domain signature. 801 821 IPR013087 -
Dere06g0589 967 SUPERFAMILY ENTH/VHS domain 81 211 IPR008942 -
Dere06g0589 967 MobiDBLite consensus disorder prediction 935 967 - -
Dere06g0589 967 CDD CID_Pcf11 87 207 IPR047415 -
Dere06g0589 967 Gene3D - 79 208 IPR008942 -
Dere06g0589 967 SMART 558neu5 85 207 IPR006569 -
Dere06g0589 967 MobiDBLite consensus disorder prediction 640 675 - -
Dere06g0589 967 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Dere06g0589 967 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Dere06g0589 967 Pfam CID domain 102 202 IPR006569 -
Dere06g0589 967 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 75 960 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Dere06g0589 967 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0589 Dere-ChrDere06 9908463 9916419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0589 707 967 C2H2 Transcription Factor Family AT4G04885 67.557 3.92e-111 360