Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0583 ATGGCTATCCATGATCAACCTTTGCTTAATACTCCCAAAAAATCTTACGCTTCTAAAACTCTCTTCCTGATTCTCTCTGTGGCTACTATTCTAAGCTCCTCAGCCTTCATTGCTTCTTATCTCCACAAACCCACCTCCTCCTTCTTCAACCTCTCCATCCCTCACCACCATCTCTGTGACCATGCCCTTCACAAACCATCATGCCTAGCCCATGTCTCAGAAGTGGCCAAATCCTCTTCACTCTTCACCACAAGTGATCAAAAACTCAGTCTCGTCCGATCATTCCTTCTCAAATCTACGTCCCACATCGAGCAAGCTATGCACACTGCCAAGTCTGTAAGATATCGCATCAATAGTCCTCAACAAGAAGCTGCTTTGCTCGACTGTGAGCAGCTCATGGGCCTCTCCATAAACAGAATCTGGGACTCTATTATGGCTCTTACTAAAAACACTACAGAAGCACAGCAAGACGCGCACGCATGGCTAAGTTCTGTGCTCACGAACCACGTCACTTGCTTTGACGGTCTCGATGGTTCGGCTCGAGCCCTCATCGAAGCTGAGCTCAAGGACTTGATTTCCCGAGCCAGGACCTCTTTAGCCATTCTCGTTGCTGCTTTGCCTCCAAAAGTTGATCTTCTGGAGGAGCCTTCAAGTGGGGATTTTCCGTCATGGGTGAAGAGGGAGGATCGTAGGCTTTTGGAGGCGGCTTCAACGGAGGCGATTAAGGCGAATGTGGTGGTGGCGAAGGACGGGAGTGGGAGGTTCAAGACGGTGGCGAAGGCCGTGGCTTCAGCACCGGACAACGGGAAGACGAGGTACGTCATCTATGTGAAGAAGGGAAAGTACAAAGAGAATGTAGAGATCGGTGAAAAGAAGAAGAATGTGATGCTCGTCGGCGATGGGATGAACGCCACTATAATCACCGGCAGTTTGAATGTTGTCGACGGATCAACTACCTTCGAATCTGCCACTGTGGGTATAGATGGGCCTCAGCTTGAAGAGCTCATGGGCTTTTCTATAAATAATATGAATGTGCTCCTGGGTAGTGGCAACCCAGACATGGAAGCAAAGACAGCATCCAAAGCTGATGCTAGTAAATCTAGACATGTTCCTCGGTGGTGTACAGGCTCTTTGCATTATCTGTTCAGAAAATTTTGGTCCCTGCTTCTTCCCATTGCAGAACTTGTCATTTCCACCATGGCAACCAAGATGAAAGGGATCTACAAAAGTCTCAAATACATTTCCCAAATCTTCGTTGTGAAGGAGCGCGAGATTGAAATAGGGTACCCCACGGACGTCAAGCATGTGGCTCACATCGGATGGGATGGTCCCTCAGGGAGTGGACCCAGTTGGATGAATGAATTTAAATCAGCACCTGATTTCTCAACATCACTTGGTAATTTGGGTGATAAAAGAAATCCTAATCCTTTATCTACCACCATCATGCCCCCTCGAGATTATGCAGAATCAAGCCAAGCATCATCAAACAAGTTCAAAGACACTTCATCTCCGGAACATCCCCGAATTCCTAAAAAGCAAAAGCGGAAAAAGACCAAGTTTATCTCTTCTAAATCTTCATCTTCTTCTGCAGAAAAGCATTTAAGTGCAACAAAGTCAACATCCAGATATGGAGAGAGGGAAGCACCACTGCAGGTTGTACGAGTCTAG 1668 0.4706 MAIHDQPLLNTPKKSYASKTLFLILSVATILSSSAFIASYLHKPTSSFFNLSIPHHHLCDHALHKPSCLAHVSEVAKSSSLFTTSDQKLSLVRSFLLKSTSHIEQAMHTAKSVRYRINSPQQEAALLDCEQLMGLSINRIWDSIMALTKNTTEAQQDAHAWLSSVLTNHVTCFDGLDGSARALIEAELKDLISRARTSLAILVAALPPKVDLLEEPSSGDFPSWVKREDRRLLEAASTEAIKANVVVAKDGSGRFKTVAKAVASAPDNGKTRYVIYVKKGKYKENVEIGEKKKNVMLVGDGMNATIITGSLNVVDGSTTFESATVGIDGPQLEELMGFSINNMNVLLGSGNPDMEAKTASKADASKSRHVPRWCTGSLHYLFRKFWSLLLPIAELVISTMATKMKGIYKSLKYISQIFVVKEREIEIGYPTDVKHVAHIGWDGPSGSGPSWMNEFKSAPDFSTSLGNLGDKRNPNPLSTTIMPPRDYAESSQASSNKFKDTSSPEHPRIPKKQKRKKTKFISSKSSSSSAEKHLSATKSTSRYGEREAPLQVVRV 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0583 555 SMART PBD_5 427 458 IPR000095 -
Dere06g0583 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 204 IPR035513 -
Dere06g0583 555 FunFam Elongation factor Ts, mitochondrial 420 466 - -
Dere06g0583 555 Pfam Plant invertase/pectin methylesterase inhibitor 57 194 IPR006501 GO:0004857
Dere06g0583 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 201 IPR035513 -
Dere06g0583 555 PANTHER PECTINESTERASE 30 330 - -
Dere06g0583 555 SMART PMEI_2 44 201 IPR006501 GO:0004857
Dere06g0583 555 MobiDBLite consensus disorder prediction 463 555 - -
Dere06g0583 555 MobiDBLite consensus disorder prediction 463 500 - -
Dere06g0583 555 CDD CRIB 425 458 - -
Dere06g0583 555 CDD PMEI-like_4 67 204 - -
Dere06g0583 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Dere06g0583 555 Pfam P21-Rho-binding domain 426 458 IPR000095 -
Dere06g0583 555 Gene3D - 238 369 IPR012334 -
Dere06g0583 555 MobiDBLite consensus disorder prediction 522 544 - -
Dere06g0583 555 ProSiteProfiles CRIB domain profile. 427 440 IPR000095 -
Dere06g0583 555 SUPERFAMILY Pectin lyase-like 238 342 IPR011050 -
Dere06g0583 555 NCBIfam pectinesterase inhibitor domain 56 180 IPR006501 GO:0004857
Dere06g0583 555 Pfam Pectinesterase 244 331 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0583 Dere-ChrDere06 9729669 9738996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0583 1 329 Carbohydrate Esterase AT1G11580 44.940 5.52e-80 260