Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0576 ATGTTGGTGGATTGCTGCGGACGAGTTTTACTGTTTAGTTTTCGATGTCTTAGAGTTTCTCAAATTTTGGTCTGTTGCTATTTTCTGCCCTTTCTGGCTGTGTTGTTCGTTCCAATGGACGCGCAGGACCTCTTCTACCTTCGCATTTCAATTTCATTTTATTTCGTCTCAGAGAAAGCCTTATATACCTCCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCTGACACTATCGACAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAGCAGCGTCTCATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGACTACAACATCCAAAAGGAATCCACGCTCCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACCCTTGAGGTCGAGAGCTCCGACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATCCCACCAGACCAGCAGAGGCTAATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTCGCCGACTACAACATCCAAAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGCGTGGTGGCATGCAAATCTTTGTCAAGACTCTTACCGGCAAGACCATAACCCTTGAGGTTGAAAGCTCCGACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAGCAGAGGCTAATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTTGCCGACTACAACATCCAAAAGGAATCCACCCTCCACCTTGTCCTGCGTCTTCGTGGTGGTATGCAAATCTTCGTCAAGACCCTTACTGGGAAGACCATAACCCTTGAGGTGGAGAGTTCAGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAACAGAGGCTCATTTTCGCTGGTAAGCAGCTCGAGGATGGTCGAACCTTGGCTGATTATAACATCCAGAAGGAGTCTACCCTCCACCTTGTCTTGCGTCTCCGTGGTGGTATGCAGATTTTTGTGAAAACCCTTACAGGTAAGACCATCACTCTCGAGGTTGAGAGCTCAGACACTATTGACAATGTTAAGGCCAAAATTCAAGACAAGGAAGGCATCCCACCAGACCAGCAAAGATTGATTTTTGCTGGAAAGCAGCTCGAAGATGGACGTACACTTGCAGACTACAACATTCAGAAGGAGTCTACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGCATGCAGATCTTCGTTAAGACCTTGACTGGCAAGACCATAACTTTGGAGGTCGAGAGTTCGGACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAGCAGAGGCTGATCTTTGCTGGGAAGCAGTTAGAAGATGGAAGGACCCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTTCGTGGTGGAAACTAA 1572 0.4987 MLVDCCGRVLLFSFRCLRVSQILVCCYFLPFLAVLFVPMDAQDLFYLRISISFYFVSEKALYTSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0576 523 ProSitePatterns Ubiquitin domain signature. 169 194 IPR019954 -
Dere06g0576 523 ProSitePatterns Ubiquitin domain signature. 397 422 IPR019954 -
Dere06g0576 523 CDD Ubl_ubiquitin 143 218 - -
Dere06g0576 523 FunFam Polyubiquitin 3 295 370 - -
Dere06g0576 523 ProSiteProfiles Ubiquitin domain profile. 371 446 IPR000626 GO:0005515
Dere06g0576 523 FunFam Polyubiquitin 3 67 142 - -
Dere06g0576 523 PRINTS Ubiquitin signature 77 97 IPR019956 -
Dere06g0576 523 PRINTS Ubiquitin signature 119 140 IPR019956 -
Dere06g0576 523 PRINTS Ubiquitin signature 98 118 IPR019956 -
Dere06g0576 523 CDD Ubl_ubiquitin 295 370 - -
Dere06g0576 523 ProSiteProfiles Ubiquitin domain profile. 447 522 IPR000626 GO:0005515
Dere06g0576 523 ProSitePatterns Ubiquitin domain signature. 321 346 IPR019954 -
Dere06g0576 523 ProSiteProfiles Ubiquitin domain profile. 143 218 IPR000626 GO:0005515
Dere06g0576 523 SUPERFAMILY Ubiquitin-like 218 294 IPR029071 -
Dere06g0576 523 ProSiteProfiles Ubiquitin domain profile. 67 142 IPR000626 GO:0005515
Dere06g0576 523 Pfam Ubiquitin family 145 216 IPR000626 GO:0005515
Dere06g0576 523 Pfam Ubiquitin family 297 368 IPR000626 GO:0005515
Dere06g0576 523 Pfam Ubiquitin family 449 520 IPR000626 GO:0005515
Dere06g0576 523 Pfam Ubiquitin family 69 140 IPR000626 GO:0005515
Dere06g0576 523 Pfam Ubiquitin family 221 292 IPR000626 GO:0005515
Dere06g0576 523 Pfam Ubiquitin family 373 444 IPR000626 GO:0005515
Dere06g0576 523 ProSiteProfiles Ubiquitin domain profile. 295 370 IPR000626 GO:0005515
Dere06g0576 523 SUPERFAMILY Ubiquitin-like 142 218 IPR029071 -
Dere06g0576 523 SUPERFAMILY Ubiquitin-like 370 446 IPR029071 -
Dere06g0576 523 CDD Ubl_ubiquitin 447 522 - -
Dere06g0576 523 ProSiteProfiles Ubiquitin domain profile. 219 294 IPR000626 GO:0005515
Dere06g0576 523 FunFam Polyubiquitin 3 143 218 - -
Dere06g0576 523 FunFam Polyubiquitin 3 447 522 - -
Dere06g0576 523 FunFam Polyubiquitin 3 219 294 - -
Dere06g0576 523 CDD Ubl_ubiquitin 67 142 - -
Dere06g0576 523 SUPERFAMILY Ubiquitin-like 446 522 IPR029071 -
Dere06g0576 523 CDD Ubl_ubiquitin 219 294 - -
Dere06g0576 523 ProSitePatterns Ubiquitin domain signature. 93 118 IPR019954 -
Dere06g0576 523 ProSitePatterns Ubiquitin domain signature. 473 498 IPR019954 -
Dere06g0576 523 Gene3D - 447 523 - -
Dere06g0576 523 Gene3D - 143 218 - -
Dere06g0576 523 Gene3D - 62 142 - -
Dere06g0576 523 Gene3D - 219 294 - -
Dere06g0576 523 Gene3D - 372 446 - -
Dere06g0576 523 Gene3D - 295 371 - -
Dere06g0576 523 CDD Ubl_ubiquitin 371 446 - -
Dere06g0576 523 SUPERFAMILY Ubiquitin-like 294 370 IPR029071 -
Dere06g0576 523 SUPERFAMILY Ubiquitin-like 66 142 IPR029071 -
Dere06g0576 523 PANTHER UBIQUITIN 219 298 - -
Dere06g0576 523 ProSitePatterns Ubiquitin domain signature. 245 270 IPR019954 -
Dere06g0576 523 SMART ubq_7 219 290 IPR000626 GO:0005515
Dere06g0576 523 SMART ubq_7 295 366 IPR000626 GO:0005515
Dere06g0576 523 SMART ubq_7 371 442 IPR000626 GO:0005515
Dere06g0576 523 SMART ubq_7 67 138 IPR000626 GO:0005515
Dere06g0576 523 SMART ubq_7 447 518 IPR000626 GO:0005515
Dere06g0576 523 SMART ubq_7 143 214 IPR000626 GO:0005515
Dere06g0576 523 FunFam Polyubiquitin 3 371 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0576 Dere-ChrDere06 9674714 9677812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0576 447 522 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 5.35e-46 155