Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0562 ATGGCTTCTTGTTGGGGAACTAGAAAGCCCGGTACCACATTTGTGATGTTGGACTCTAAAGGGGAATTGGTTGATGAGATGCATGCGGGGTCACTTACTCTGGGATCACAGAATATAAATGATCCACAGCGCAGGAAAAACGATCAACAACGTGTTCTTGAGTTCCTGAGAAATCATCAACCAGACGTAATTGTTATAGGAGCTGCTAACGCATCCTGTATACGGTTGAGAGATGACGTTAATGAGATTATTTCAATGATGTTGGAGGAAAATCTACAAGATCAATGGTTGCAACACTCTGTGGAGTCTATGGCCCATAAAGAACCTGCTGAAAGGAGACAAAGCACTGGAAATGGCTATAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAATGTAGAAGAAAGTATGCTACCAAACACATTGCCTACGAGGGTGGGAGATGATAGGTCTGTTCCACATTTAGAGGCAGAGTCTGACCAGCATTCTGAACCATTGAATGTTAATCGTGCTGATGTTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCCCCCCCTGAAGCACAAAGCAAGCAAATAAGGAGCTGTGCGAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTGACTCAGTTTGATGGATATGAGGATCTGCTTAAGAAATTAGAGCAGATGTTTGGCATCAAGGGTGAGCTTTGTGGATCCAGTAAAACATGGTAG 738 0.4377 MASCWGTRKPGTTFVMLDSKGELVDEMHAGSLTLGSQNINDPQRRKNDQQRVLEFLRNHQPDVIVIGAANASCIRLRDDVNEIISMMLEENLQDQWLQHSVESMAHKEPAERRQSTGNGYRLFGIQLLENSNVEESMLPNTLPTRVGDDRSVPHLEAESDQHSEPLNVNRADVPSVSCDAEKSCLQSPPEAQSKQIRSCAKVHMQGMAVGRAVDLTQFDGYEDLLKKLEQMFGIKGELCGSSKTW 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0562 245 Pfam AUX/IAA family 194 233 IPR033389 -
Dere06g0562 245 Gene3D - 1 164 IPR037027 GO:0006139
Dere06g0562 245 ProSiteProfiles PB1 domain profile. 197 245 IPR000270 GO:0005515
Dere06g0562 245 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 1 94 IPR017072 GO:0032968
Dere06g0562 245 Gene3D - 192 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0562 Dere-ChrDere06 9240258 9241152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0562 100 245 B3 DNA Binding Superfamily AT1G59750 55.479 1.99e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere06g0562 AUX_IAA 4.8e-07 CL0072