Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0555 ATGGGCGGAGGTGGAACAACGCACGTGGAGGCGCAGTACTCCTTGGCGAAGATTTCGGTGTGGTGGGACATCGAGAACTGCCATGTCCCCAAAGGCTGCGATCCACATGCCATCACCCAGAACATTACCTCGGTGCTGGTTCAGATGAGCTATTGTTCGGATGTGGGACTTCGGCAAAAGCCCGTCTACTTATACCCGTTTACCTCTTCTAATAGTGTTATGCAGAGAAAGATCAAACAGCAGTATGATGAGCTAGTGAAATGCCGCAAGTTGAAGAAATTGACGCTGGCCCAGGTGAGGGCAGTTTGTATGATTTCGAACTCTACCAGTGTTGCTGAGGTGTTCTCTCGCGTTGACCACAAGTTTGATCTTATGTATGCTAAGCGAGCTTTCGTCCACTGGTATGCGGGAGACGGTATGGAAGAAGGAGAATTTTTTGAAGCTCGTGAGGATCTTGCTGCCCTTGAGAAGGACTACGAGGAGGTGCAGGCCGTGAGAGTGCAGAAGCAGAACGTGTGA 519 0.5048 MGGGGTTHVEAQYSLAKISVWWDIENCHVPKGCDPHAITQNITSVLVQMSYCSDVGLRQKPVYLYPFTSSNSVMQRKIKQQYDELVKCRKLKKLTLAQVRAVCMISNSTSVAEVFSRVDHKFDLMYAKRAFVHWYAGDGMEEGEFFEAREDLAALEKDYEEVQAVRVQKQNV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0555 172 PANTHER TUBULIN 91 164 IPR000217 GO:0005874|GO:0007017
Dere06g0555 172 FunFam Tubulin alpha chain 111 163 - -
Dere06g0555 172 SUPERFAMILY Tubulin C-terminal domain-like 84 163 IPR008280 -
Dere06g0555 172 Gene3D Helix hairpin bin 111 163 IPR023123 -
Dere06g0555 172 Coils Coil 145 172 - -
Dere06g0555 172 PRINTS Alpha-tubulin signature 112 128 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dere06g0555 172 PRINTS Alpha-tubulin signature 149 165 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0555 Dere-ChrDere06 8851743 8853080 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0555 9 57 C2H2 Transcription Factor Family AT5G61190 55.102 1.48e-13 65.9