Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0541 ATGTCCATCTTTTCTTTGGCTTTGCTTTCATTCCTCTCTCATCTCACCATTCTCCAGGCCCAGGATCACTTCATATATTCGAACTGCTACAATGATAAAGGTAACTATACAAATACAAGTGCCTACCACTCCAACCTCAATACCCTTCTTTCTAATCTCACCTCCAACACAAAAATCGACTATGGCTTCTACAATTCCTCTTATGGCCAAAACCTTGACAGAGTTAACGCAATCGGACTCTGCAGAGGAGACGAGAAGCCAGATTCTTGCCGTAGTTGCCTCAAAAATGCCACAATCTTTCTCCGAAATCTATGTCCAAATCAGAAAGAGGCATTCGGATACAATGACGGATGCATCTTGCGATACTCTAATCGTTCAATATTTCGGATAAACCAGGATTCTGATTTTTCTATCTATATGTGTAACCCAAGTAATGCAACAAATGCAAACATGTACAATGGTTTGCTTGATGGACTGTTGCGAAATATAACAAGCAGAGCTGCAGCTGGTGACTCTCGTCGTAAGTTTGCTGCAGCAAATGCGACAGGTCTGTTTCAAACCGTATTTGGTCTTGTTCAGTGCACACCTGATTTGTCTGAGCAAGATTGTGAAGACTGCCTGGTGAAGGCTATGTCGGAAATCCCGAGACTTTGTCCAGACAGGGTCGGTGGTAGAGTTATTAAACTCAGCTGCAATGTTAGATACGAGAACTACGCCTTCTATGATCGTGCAGTTGTTGATTCACTACAGACATCCCCTACTCTTCATCCATCAACCAATACAACTTCCTCCCATGTAGTTGCTGATTCACCAAAATCAACATCTTCCTCAGAAGGAAATAACAACAGATCAAGAACTGTCATTATGGTGGCTGCGTCGATATGTGCCTTTTTCGCAATTCTCTTCTTCATCTGCATCTATTTTGTAGTTAGGAAATCGACGAAAACCATTAAAATTCGAGCTCAAACAGAGGGCGATGATGAAATCAAACCAATTGAGTCATTTCAATTCGACTTTGACACCATCAGACTTGCTACAGATAACTTTTCTATTGCAAATAAGCTTGGACAAGGAGGATTTGGACCAGTATACAAGGGTAGGCTCTACAATGGACAAGAAATTGCTGTCAAAAGGTTGTCCATGGATTCTGGGCAAGGAGATTCAGAATTCAAGAATGAAGTGTTGTTGGTGGCCAAGCTTCAACATCGCAATTTAGTAAGATTACTCGGTTTCTGCTTGGAAAGAAAAGAAAGGCTACTTATCTATGAATTTCTTCCCAATAAAAGTCTTGACTACTTACTATTCCATCCAAACCAACGTGCTCATTTGAACTGGGAAATGCGGTACAAAATTATAGAAGGCATTGCTCGTGGCCTTCTTTACCTTCATGAAGATTCAAGATTACGTATTATACATCGTGATCTCAAAGCAAGTAATATTCTTCTAGATGAAGAGTTTAACCCCAAAATATCTGATTTTGGCATGGCAAGACTATTTGTCATGGATCAAACTCAAAGCAATACTAGTAGAATTGTTGGAACATATGGTTATATGGCACCAGAATATGCAATGCATGGACAATTCTCACTAAAATCAGATGTCTTCAGTTTCGGTGTGCTGGTTCTAGAGATTGTAAGTGGCAAAAAAATCAATACCATCTTTCATGAAGAGAATGTACAAGATTTATTAAGCTTCTATAGTTCAAGGGCATCAGGATCAAGTGAACAAAGAAGTAACTCTATTCAGTCATCAAGTGGACGAGAAAATAGCTCCATTCAAGCATCTAAAAATGAGGCCTCAATTACTGAACTATTCCCTCGTTAG 1824 0.3986 MSIFSLALLSFLSHLTILQAQDHFIYSNCYNDKGNYTNTSAYHSNLNTLLSNLTSNTKIDYGFYNSSYGQNLDRVNAIGLCRGDEKPDSCRSCLKNATIFLRNLCPNQKEAFGYNDGCILRYSNRSIFRINQDSDFSIYMCNPSNATNANMYNGLLDGLLRNITSRAAAGDSRRKFAAANATGLFQTVFGLVQCTPDLSEQDCEDCLVKAMSEIPRLCPDRVGGRVIKLSCNVRYENYAFYDRAVVDSLQTSPTLHPSTNTTSSHVVADSPKSTSSSEGNNNRSRTVIMVAASICAFFAILFFICIYFVVRKSTKTIKIRAQTEGDDEIKPIESFQFDFDTIRLATDNFSIANKLGQGGFGPVYKGRLYNGQEIAVKRLSMDSGQGDSEFKNEVLLVAKLQHRNLVRLLGFCLERKERLLIYEFLPNKSLDYLLFHPNQRAHLNWEMRYKIIEGIARGLLYLHEDSRLRIIHRDLKASNILLDEEFNPKISDFGMARLFVMDQTQSNTSRIVGTYGYMAPEYAMHGQFSLKSDVFSFGVLVLEIVSGKKINTIFHEENVQDLLSFYSSRASGSSEQRSNSIQSSSGRENSSIQASKNEASITELFPR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0541 607 Gene3D Transferase(Phosphotransferase) domain 1 425 602 - -
Dere06g0541 607 MobiDBLite consensus disorder prediction 255 281 - -
Dere06g0541 607 MobiDBLite consensus disorder prediction 572 600 - -
Dere06g0541 607 SMART serkin_6 349 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g0541 607 ProSiteProfiles Gnk2-homologous domain profile. 24 127 IPR002902 -
Dere06g0541 607 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 564 - -
Dere06g0541 607 Pfam Salt stress response/antifungal 141 238 IPR002902 -
Dere06g0541 607 Pfam Salt stress response/antifungal 29 124 IPR002902 -
Dere06g0541 607 FunFam Lectin-domain containing receptor kinase A4.3 425 579 - -
Dere06g0541 607 CDD STKc_IRAK 355 549 - -
Dere06g0541 607 FunFam Cysteine-rich receptor-like protein kinase 10 311 424 - -
Dere06g0541 607 SUPERFAMILY Protein kinase-like (PK-like) 325 564 IPR011009 -
Dere06g0541 607 FunFam Cysteine-rich receptor-like protein kinase 10 136 240 - -
Dere06g0541 607 ProSiteProfiles Gnk2-homologous domain profile. 134 240 IPR002902 -
Dere06g0541 607 Pfam Protein tyrosine and serine/threonine kinase 351 552 IPR001245 GO:0004672|GO:0006468
Dere06g0541 607 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 22 127 - -
Dere06g0541 607 Gene3D Phosphorylase Kinase; domain 1 325 424 - -
Dere06g0541 607 MobiDBLite consensus disorder prediction 572 607 - -
Dere06g0541 607 ProSiteProfiles Protein kinase domain profile. 349 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g0541 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Dere06g0541 607 Gene3D - 21 126 IPR038408 -
Dere06g0541 607 Gene3D - 133 240 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0541 Dere-ChrDere06 8324625 8328876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0541 1 565 Receptor kinase-like Gene Family AT4G05200 46.886 9.49e-166 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere06g0541 PK_Tyr_Ser-Thr 1.7e-45 CL0016