Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0540 ATGACAACGTCTATCATTTCTTTGGCTCTGCTTTCATTTCTTTCTCATGTTGTCATTCTTACTGAGCAGCCTGTCTTCATATCCACAACATGTTTCGATGACAAAGGTAACTACACAAATACAAGTGTCTACCGCTCCAACCTCAATACGCTTCTTTCAAATCTCACTTCCGACACAAAAATTGACTATGGCTTCTGCAATTCCTCGTATGGCCAAAACCCTGACAGAGTTAACGCAATCGGACTCAGTAGAGGAGACGTAGATCCTGGTTCTTGCCGTGGTTGCCTCAACAGTGCCTCAATTGACCTCCCAAAGTGGTGTCCAAATCATCAGGAGGCAATGGGATTCAATGACAAATGCTTTTCACGATACTCAAATCCTTCAGTATTTGGGTCTAACTACATGGACTCTAGCTTTTACTCCTGTTTTCTCAACCCAGGTAATGCAACACATGCGAACAAATACAATGATGTGCTTGATGGTCTATCGCGAAGTCTGAGAAGCAAAGCTACTGCTGGAGACTCTCATCGTAAATTTGCTGCGGCAAACAAAAACATTCAGTCTCAAATTATATATGGTCCTGTTCAGTGTACGCCTGATTTGTCTGAACAAGATTGCGACAGCTGCTTGGTGAGAGCTAACTCGGAATTCCCAAATTGTGGTCGCAAGGACAAGGTGGGGTGTAGGGTGGTCAAACTTAGCTGCAAAGTTAGATATGGGAACTACAGCTTCTATGATCAAGCAGTTGTCGATTCACTACAACCACCTCCTCCTCTTGCTCCATCTACCAATCCAACTTCCTCACCGGGTATCTCTCAACGAAAGCTTCAATCAATTAATTCTGTCGGGCCAACTGATTTACAAAAGACTATGCCATCCTCCAAAGGAAATAGCAACAGATCAAGAATTGCCATTATCGTGGCTGTGCTGATTGGCGCCTTTATTGCACTTCCCTTCTTGGTGTGCATCTATTTTGCAGCTAAGAAATCAAAGAAAACCATTGAAATTAAAGCTGAAACCAGGGATGGTGACGAAATTGAACCACCAGAATCATTGCAATTTGACTTTGACACCATCAGACTTGCTACTGATAACTTCTCTATTGCAAATACGCTTGGAGAAGGAGGATTTGGGCCTGTGTACAAGGAAATACGATATAAAATCATAGTAGGAATTGCTCGTGGAGTTCTTTACCTTCATAAGGATTCAAGATTACGTATTATTCATTATGACCTCAAGGCAAGCAATACTCTTTTTGATGAAGAGTTAAACCTAAAGATATTAGATTTTGGCATGGCGAGACTATTTATTGTAGATCAAACTCAAAGCAACACAAGTAGAGTTTTTGGAACTTAG 1356 0.4152 MTTSIISLALLSFLSHVVILTEQPVFISTTCFDDKGNYTNTSVYRSNLNTLLSNLTSDTKIDYGFCNSSYGQNPDRVNAIGLSRGDVDPGSCRGCLNSASIDLPKWCPNHQEAMGFNDKCFSRYSNPSVFGSNYMDSSFYSCFLNPGNATHANKYNDVLDGLSRSLRSKATAGDSHRKFAAANKNIQSQIIYGPVQCTPDLSEQDCDSCLVRANSEFPNCGRKDKVGCRVVKLSCKVRYGNYSFYDQAVVDSLQPPPPLAPSTNPTSSPGISQRKLQSINSVGPTDLQKTMPSSKGNSNRSRIAIIVAVLIGAFIALPFLVCIYFAAKKSKKTIEIKAETRDGDEIEPPESLQFDFDTIRLATDNFSIANTLGEGGFGPVYKEIRYKIIVGIARGVLYLHKDSRLRIIHYDLKASNTLFDEELNLKILDFGMARLFIVDQTQSNTSRVFGT 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0540 451 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Dere06g0540 451 Gene3D - 136 244 IPR038408 -
Dere06g0540 451 Gene3D - 25 128 IPR038408 -
Dere06g0540 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Dere06g0540 451 SUPERFAMILY Protein kinase-like (PK-like) 349 451 IPR011009 -
Dere06g0540 451 ProSiteProfiles Protein kinase domain profile. 231 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g0540 451 Pfam Salt stress response/antifungal 147 242 IPR002902 -
Dere06g0540 451 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Dere06g0540 451 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 17 255 - -
Dere06g0540 451 FunFam Os07g0541700 protein 380 451 - -
Dere06g0540 451 MobiDBLite consensus disorder prediction 255 274 - -
Dere06g0540 451 ProSiteProfiles Gnk2-homologous domain profile. 137 244 IPR002902 -
Dere06g0540 451 Gene3D Transferase(Phosphotransferase) domain 1 386 451 - -
Dere06g0540 451 Gene3D Phosphorylase Kinase; domain 1 338 385 - -
Dere06g0540 451 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
Dere06g0540 451 Pfam Protein kinase domain 387 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0540 Dere-ChrDere06 8264610 8267603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0540 38 451 Receptor kinase-like Gene Family AT4G23280 35.650 4.12e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere06g0540 Stress-antifung 1e-12 No_clan