Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0525 ATGGCGAGCCCGATTGCAGAGAAAAAGACCAGAGGTCGGCAAAAAGTTGAAATAAAAAAGATGACCAATGAGAAGAACCTCAAAGTCACTTTTTCCAAGCGCCGAACTGGCCTCTTCAAGAAGGCCGGCACCCTCTCCACGCTATGCGGCGCGGAGGTTGCCATTATCGTCTTCTCGCCGGGCGGTAAGCCCTTCACCTTCGCCCACCCGAACCTCGACGGAGTTTTGAACCGTTTTCTTACCCAGAACAACAGGGTTTATAGGCTGAAAGGCGAGATGAGAAAGCTCAGGGAAGAGGTGCAGGCGGAGAAGCAGCGGGCGGCTGAGCTCCGGTGGAGGAGGAGGGAGATGGAGGATAAATTCTGGTGGGCTGCTCCATTTGACACTCTCTCTAACGATCAGCTTCTGGTGGTAAAGGCAAGCCTGGAGCATCTGCACAAGGACCTCACAGATCAACTTAATCCTCTCCTGCTTCCTAGTGTTTCCAACGCTAATGTTAACCCACCTCATGACGACTTCTTCGTGGCGCCACCACCAGTTCAGACGATGACGATGTATCAGAATCTGGTGTTTCCCAGTGTTTCCAACGCTAACGTCAACCCACCTCATGACTACTTCTTCGTGGCGCCACCACCAGCTCCGATGATGATGATGGATCAGAATCTGGTGTTTCCCAGTGTTTCCAACGCTAACTTTAACCCACCTCATGATGACTTCTTCGTGGCGCCACCACCAGCACCGATGACGATGATTGATCAGAATTTGGTGTTCGACGGAAACATGATGGTGCCGGCGCCACGTCTTGATGGATATGGTGGACCTGCAGGGTTCTTCTGA 837 0.5233 MASPIAEKKTRGRQKVEIKKMTNEKNLKVTFSKRRTGLFKKAGTLSTLCGAEVAIIVFSPGGKPFTFAHPNLDGVLNRFLTQNNRVYRLKGEMRKLREEVQAEKQRAAELRWRRREMEDKFWWAAPFDTLSNDQLLVVKASLEHLHKDLTDQLNPLLLPSVSNANVNPPHDDFFVAPPPVQTMTMYQNLVFPSVSNANVNPPHDYFFVAPPPAPMMMMDQNLVFPSVSNANFNPPHDDFFVAPPPAPMTMIDQNLVFDGNMMVPAPRLDGYGGPAGFF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0525 278 Coils Coil 86 120 - -
Dere06g0525 278 FunFam Agamous-like MADS-box protein AGL62 23 87 - -
Dere06g0525 278 Gene3D - 23 91 IPR036879 GO:0003677|GO:0046983
Dere06g0525 278 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Dere06g0525 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Dere06g0525 278 CDD MADS_MEF2_like 12 84 IPR033896 GO:0000977|GO:0045944
Dere06g0525 278 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Dere06g0525 278 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Dere06g0525 278 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Dere06g0525 278 SUPERFAMILY SRF-like 12 84 IPR036879 GO:0003677|GO:0046983
Dere06g0525 278 PANTHER MADS BOX PROTEIN 13 151 - -
Dere06g0525 278 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0525 Dere-ChrDere06 7984091 7984927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0525 8 221 Type I MADS-box Gene Family AT5G60440 36.481 5.77e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere06g0525 SRF-TF 8.4e-23 No_clan