Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0502 ATGGGTGCTCCTAAGCAGAAATGGACCCCAGAAGAAGAAGCGGCCCTTAAGGCTGGAGTTGTGAAGCATGGGGCTGGAAAATGGCGAACAATACTCAAGGATCCTGAGTTTAGTAGGGTGTTGTACCTGCGATCAAATGTAGATCTTAAGGATAAATGGAGAAATATGACCGTGATGGCAAATGGGTGGAATTCAAGAGACAAGTCTAGGTTAGCTATTAGAAGGGCGCAACAGTTCCCAATCCCAAGACAGGAAGAGAATTCTATGGCTCTTACTCCTTTTGTTCCGAGTGATGAAGAAATTGTGGATTTTAGGCCTCAAGTTTCTGGAGATATGATGCGGATTCCTGGTCCACGGAGGACCATTGCAAGGTGGATTGAGACACTTGTGTCACTAACACTAGAAGAGGAAATATCCCTGCTAAATGAGGAAGAGGTTTCTGTCATTTATGCAATTGCAAAAAGTATCCTTACTGTGATCGTTAATCTTTCTTGATTGGATAGCCACATAATGGAAGCAATATCTAGCTTGAAGGAGCCTGGTGGTTCAAATAAGACAAGTATTGCTGCATATATAGAGGACCAATATTGGGCACCTTCAGACTTCAAGAGGTTATTGTCAGCAAAATTGAAGCATTTGACAGCATGTGGGAAACTGATCAAGGTAAAACGCAAATATAGGATTGCACCTACTCCATTGTATTCAGATAGAAGAAGAAACCCATCTATATTATTGGATGGAAGGCCGAGATTCCCTGTGAGATTTAATAAGGATGAGACTAATGTCCTTACAAAGTCTCAGATAGATTTAGAATTAGAAAAGATGGGGTCTATGACATCTCAAGAAGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATGACGGAAGCTGAAGAAGCTGCAAGGGAGGCAGAGGCTGCAGAAGCTGATGCAGAGGCAGCTCAAGCGTTTGCAGAAGCTGCCATGAAAACACTGAAAGGGAGAAACACATCAAATATGGTGGTATGGGGAGATGTGAATTGTGCTAGAACCTACCTTGTCATTTGGTTGTTCCATATGCTTGTTGTTGTAGATTCACTATTGCCTGAGGGCTGTAATTCTGAATTGGATGTACTTACCGCTTCATTATCTCTAATTCTCTGTAGTTCTGTTTTGGTCTCTATCAGCATTTCTCTAGTGTCTTTATGA 1200 0.4258 MGAPKQKWTPEEEAALKAGVVKHGAGKWRTILKDPEFSRVLYLRSNVDLKDKWRNMTVMANGWNSRDKSRLAIRRAQQFPIPRQEENSMALTPFVPSDEEIVDFRPQVSGDMMRIPGPRRTIARWIETLVSLTLEEEISLLNEEEVSVIYAIAKSILTVIVNLSXLDSHIMEAISSLKEPGGSNKTSIAAYIEDQYWAPSDFKRLLSAKLKHLTACGKLIKVKRKYRIAPTPLYSDRRRNPSILLDGRPRFPVRFNKDETNVLTKSQIDLELEKMGSMTSQEAAAVAARAVAEAEAAMTEAEEAAREAEAAEADAEAAQAFAEAAMKTLKGRNTSNMVVWGDVNCARTYLVIWLFHMLVVVDSLLPEGCNSELDVLTASLSLILCSSVLVSISISLVSL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0502 399 SMART sant 4 59 IPR001005 -
Dere06g0502 399 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Dere06g0502 399 FunFam Telomere repeat-binding factor 1 8 87 - -
Dere06g0502 399 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 162 230 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere06g0502 399 Gene3D - 164 236 IPR036388 -
Dere06g0502 399 PANTHER SINGLE MYB HISTONE 4 1 337 IPR044597 GO:0003691
Dere06g0502 399 CDD SANT_TRF 6 57 - -
Dere06g0502 399 Gene3D - 2 59 - -
Dere06g0502 399 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Dere06g0502 399 Coils Coil 284 321 - -
Dere06g0502 399 FunFam Telomere repeat-binding factor 1 162 240 - -
Dere06g0502 399 FunFam Telomere repeat-binding factor 1 2 58 - -
Dere06g0502 399 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Dere06g0502 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Dere06g0502 399 Pfam linker histone H1 and H5 family 170 223 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere06g0502 399 SUPERFAMILY "Winged helix" DNA-binding domain 165 239 IPR036390 -
Dere06g0502 399 SMART h15plus2 153 225 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0502 Dere-ChrDere06 7649770 7653094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0502 1 339 Single Myb Histone (SMH) Gene Family AT1G49950 59.827 5.83e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere06g0502 Linker_histone 5.1e-08 CL0123