Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0454 ATGGCCTTGGAGGCTCTGAATTCTCCTACTAGTATTTACAAAGAAGATGATCTTCACTCTCTCGAGGCTTGGACCAAGGGAAAGCGATCCAAACGACACCGTCTTGATCAGAACCATCCTCCCTCTGAGGAAGAGTACCTCGCTCTCTGCCTCCTCATGCTCGCTCAAAGTGGCAAGAGCAACAGTGAGAATACCAATACCAACAACAATACGACGTCGTCGTCGTCCCCTGATCCTTCTTCTTCGATGAAGCCGTCTCATAGGTGCTCTGTCTGTAACAAATCCTTCTCGTCCTACCAGGCACTCGGAGGCCACAAAGCCAGCCACCGCAAGTCCTCGTCCGACCCCGCCACGGCCGCTGACAACTCCTCTGCCTCCACTGTGATCGCCAACGCCGCCTCCGGCGGCAAGATGCACGAATGTTCCATCTGTCACAAGGCTTTTCCGTCGGGTCAAGCTCTCGGCGGGCACAAGCGCTGCCACTATGACGGCGGCAACGGCAACAACAGCAGCGGTACAACTGTTATAAACTCGTCTGAGGGAAATACCTCCTCCGCCGGCCACAGCCGCCGCGGGTTTGACTTGAACCTGCCGGCGCCCTTGACGGACTTCTCTCCGGCAGGGTTGAAAATTGGAGAACAGGAGGTGGAGAGCCCTTTGCCGGTGGCCGCCAAGAAGCCCCGTGTGTTCATGGCTGAAGATTGA 705 0.5631 MALEALNSPTSIYKEDDLHSLEAWTKGKRSKRHRLDQNHPPSEEEYLALCLLMLAQSGKSNSENTNTNNNTTSSSSPDPSSSMKPSHRCSVCNKSFSSYQALGGHKASHRKSSSDPATAADNSSASTVIANAASGGKMHECSICHKAFPSGQALGGHKRCHYDGGNGNNSSGTTVINSSEGNTSSAGHSRRGFDLNLPAPLTDFSPAGLKIGEQEVESPLPVAAKKPRVFMAED 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0454 234 MobiDBLite consensus disorder prediction 58 87 - -
Dere06g0454 234 MobiDBLite consensus disorder prediction 1 20 - -
Dere06g0454 234 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Dere06g0454 234 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 30 199 IPR044653 GO:0003700
Dere06g0454 234 Pfam C2H2-type zinc finger 139 163 - -
Dere06g0454 234 Pfam C2H2-type zinc finger 87 111 - -
Dere06g0454 234 SMART c2h2final6 139 161 IPR013087 -
Dere06g0454 234 SMART c2h2final6 87 109 IPR013087 -
Dere06g0454 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Dere06g0454 234 MobiDBLite consensus disorder prediction 103 124 - -
Dere06g0454 234 MobiDBLite consensus disorder prediction 171 199 - -
Dere06g0454 234 Gene3D Classic Zinc Finger 85 161 - -
Dere06g0454 234 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Dere06g0454 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Dere06g0454 234 MobiDBLite consensus disorder prediction 171 190 - -
Dere06g0454 234 SUPERFAMILY beta-beta-alpha zinc fingers 87 161 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0454 Dere-ChrDere06 7023162 7023866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0454 1 229 C2H2 Transcription Factor Family AT1G27730 47.737 1.44e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g0454 zf-C2H2_6 2.7e-12 CL0361