Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0422 ATGACTGGGAATTCTGTTACTGAACTTCCTGCAACAACTCAATGTGACTCAGGAAATGGTTGTCAGACTGGAGAAGGTTCATGCGTTAAACAAAGTGTCTCAGAACAAGTTTCTGGTTGTTTATCTAATGAGAAACCAATTAACCAATTTCAGCTGGCCTCTCAAAATATTCAAAATGAACTTCCTGCAAGACCTCAATGTGACTTAGGAAATGGTTGTCAGACTGGAGATGGTTCATGCCTTAAACAAAGTGCCTCAGAACAAGTTTCTGGTTGTTTATCTAATGAGAAATTAATTAACCAATTTCAGCTTGCCTCTCAAAATATACAAAATGAACTTCCTGCAACACCTCAATGTGACTCAGGAAATGGTTGTCAGACTGGAGAAGGTTCATGCCTTAAACAAAGTGCCTCAGAACAAGTTTCTGGTTGTTTATCTAAGGAGAAGTCAATCAACCAATTTCAGCCAGCCTCTCAAAATATTCAAAATGAACTTCCTGCAACACCTCAATGTGTCTTAGGAAATGGTTGTCAGACTGGAGAAGGTTCATGCCTTAAACAAAGTGCCTCAGAACAAGCTTCTGGTTGTTTATCTAATGAGAAATCAATTGACCAATTCCAGCCAGCCTCTCAAAATGAACTTTCTGCAACACCTCAACGTGACTTGGGAAGTGGTTGTCAGATCAGAGAAGTTTCATACCTTATGGAAAGTGTCTCGGAACCAGTTTCAGGTTGTTTATCTAATGAGAAATCAATTAACCAATTCCAGCCAGCCTCTCAGAATATTCAAAATGAACTTCCTGCAACACCTCAACGTGACTTGGGAAATGGTTGTCAGATCAGAGAAGTTTCATGCCTTAAGGAAAGTGTCTCGGAACCAGTTTCAGGTTGTTTATCTAATGAGCAATCAATTAACAAATTTCGTCCAGCCTCCCAAAATATTCCAAATGAACATCTTGCAACACTTCAATGTGACTCAAGAAATGTTTGTCAGATTGGAGAAGGTTCATGCCTTAAACAAAGTGTCTCAGAACGAGTTTTAGGTTGTTTAGCTAATGATAAATCAATTGACAAATTGCAGCTGGCCTCTCAAAACACTCAAAATGAACCTGTTGAAGTAAATGATGCAGTTATCAGCTTTAGGGTTAAAGACCAAATGCAATCAGTTACTGCTGAGGGGACCACAGGTAATGGAAATGAACTATTAAATCTACCTTCTGGAGATGTTGCCAAAAGTAATAGTTGTGACAGTATGGAAAGAACATCTAAAAGGGCAATGCATATTAAGTTGGGGCGAAGGAAAAAAATAGCATCAAACTCATTGAAGAAGAAATACATGCTAAGGTCATTAGTCAGCAATGGCAGAGCTATGCGATCAAAGACACGAGAAAAAACTAAAGTACCTGAATCAAATACTAATTTGGTTAATGTTAGAAATGATGGAGAGAAGAGTAAAAGAGGGAGGAAGAAGAAGAAAAGGAGACTGGGAGAGGGAGTGGCTGATGAATTTTTAAGAATCAGAGCTCACCTACGATATTTACTGAACAGGGTGAGCTATGAGCAAAACTTGATCGAGGCTTATTCTGGGGAGGGCTGGAAAGGATACAGCTTGGATAAACTAAAGCCTGAGAAGGAGCTTCAACGGGCCAAGTCTGAAATACTTCAGCGGAAGTTAAAAATTAGGGATCTGTTTCAACATCTGGATCAATTGTGTGCTGAAGGAAGGCTTCCAGAATCTTTGTTCGATTCTGAAGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGTGGGTCCAAAGACTTGAGCACTGGTAATGACATAATACTATGTGACGGTGCTTGCGACCGTGGATTTCACCAGTTCTGTTTGGAACCTCCATTGTTAACTGAAAACATTCCACCTGATGACGAGAGTTGGCTATGCCCTGGATGTGATTGCAAAGATGACTGTATTGAACTCCTTAATGAATCCTTTGGAATGAGTCTCTCTATTGGTGACACTTGGGAGAGGGTTTTTCCTGAGGCAGCAGTTGCTGCTGGAAATAATGTGGATAAAAAATTGAGACTTCCTTCAGAGGATTCTGATGATGATGATGATGATGATTATAATCCTAATGCTTCAGAAGATATGGATATTATAGGATATGAATCAAATTCTGAAGAATCTGACTATGCTTCTGCTTCTGAAAAATTGGATGATCAACGGAAGGAGAATCAGTATGTAGGCCTTCCTTCTGATGATTCAGAGGATGATGAATATGATCCTGATGTTCTAGATTCTGATAAAAAAGTCATCGAAGAAAGTTCAAGCAGCGATTTCACGTCTGATTCTGAGGATCTTACTGCTACAATTAGGGATAACATGTTCTCGGAGCAGGATGAAGATCCTGTATCTGCCTCGTCGGGTGATATAAAGCAGTTTAAAGTTTCTGGCAGACAAAGATTTACAGCTGGTACGAGGCATACTCTAGCTGATGAACTGTCATCTTTACTGGAGTTAGATCCTGGCCAAGAGGGTTCTGCTCCTGTTTCTGGGAAAAGACATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGACGTACAAAAACATTGAGTATGATACTAGCGATGATGAGGATTGGACTGACACTGCTACTGCAAGTAGAAGGAAGAAACTCACTAGGAAAGTCACTCCAGTGTCACCAAATGGAAAATCCTCTGCAGAGGACCACATACAGAAGGAAACTGCACATACTCCTGCGAGAAATATTAGTCATAATAAAGTTGAGAATACAAGTAATACACCACTTGAAGGCTCTAGAATATCTCCTTCCAGTGATAAAAGACCTCGATCTTCAACTCACAAACGGCTTGGGGAAGCTGTGCTTCAGAGACTTTACAAGTTCTTTAAAGAAAATCAGTATCCTGATCGAGTCACAAAGGAAAGCTTGGCACAAGAACTTGGACTCACTTTCCAACAGGTTAACAAATGGTTTAGTAATACTCGGTGGAGCTTTCAGCATCCATTGCATAGAAGAGCAAGCTCAGATAGGAATGCTTTGGGGCAGGCTACTTGCAGCAAAGCTGAGAATCAGGAATCACTTGGTGGTGAGGAGAGGGACCATGAATTGGCAACCCAGGAACGGAGTGGAGAAAAATCAAAACCCCGAAGAGGTAGAAAGAGGAAGAGTGAGTCAGATCCCAAGGCATCTGATGCAAATATTGACAGTGCAGCAACACAACCTCCTGCTGGATCATCAGGAGCTCAAAAAGTGCAAAGAGGTCACCGAATGAAGAAGAGGAGAAGAAAATCATTCCAAGATGCATTTGGAACCCTTGGCTTCTCATATTATGGAGCTAACATTCTGATAGACAAGAGGCGTTGTAATGGTTGGATTCAAGTGTTAAACGGCTTGGAAGGCAAATTAGTTTGGACTCAAATCAGAAATCACGAATCACTTCCGAAGCAACGAAAAGAGGGAAAACGAGTCGGTGAGTTGAAGATGGAAGTGGAGGTCGACGAAAAGGACCTGAAAGCCGCCGGCGCTGAGCTCTTCGCCGGTGATGGTCGACGTGGTCTTCGCATCCACGGTTGGGAGATTGAGACTCGGAAACTTTCCATACTCAACTCCTCCACTGCCCACGAATGGGAACAGAAACTCCAGACGTCTCACTTACCAGAAATGGTTTTTGGGGAAAACTCTTTGATTCTAAAACATGTGAATAGTGGCACTAAAATTCTTTTTAATGCATTTGATGCTCTACGTGGATGGAAACAGGAAGCCTTGCCACCAGTTGAAGTGCCGGCAGCTGCAAAGTGGAAGTTTAGAAGCAAACCCTCTCAGCAAGTAATACTAGATTATGACTATACATTTACAACACCTTATTGTGGAAGTGGAACTATTGAGATTGATAAAGATAAGAATGGTGACATTTCTGAGGAAAACAGCAATCTCAAATGGGAAGACTGCAAGGAGAAAATTGATGTAGTTGCGTTGGCATTCAAAGAACCTATACTTTTTTATGATGAGGTGGTCCTTTATGAGGATGAACTAGCTGATAATGGGGTATCCCTTCTTACTGTAAAAGTGAGAGTCATGCCAAGTTCTTGGTTTCTTCTCTTGCGATTCTGGCTTAGAGTTGATGGAGTGTTGATTAGACTGAGAGACACTCGAATGCATTGTGTATTTGGTGGCACTGCAAATCCTGTTATACTTCGAGAGACTTGTTGGAGGGAGTCTACATTTCAAGCTTTGTCTGCGAAAGGACACCCTTTTGATTCTTCTGCCTATAGTGATCCTAGCGTCATCAGCCAGACGCTCCCCGTCATCATGCATCAGACCCAAAAGTTTACAGTTTCCACTTGA 4353 0.4133 MTGNSVTELPATTQCDSGNGCQTGEGSCVKQSVSEQVSGCLSNEKPINQFQLASQNIQNELPARPQCDLGNGCQTGDGSCLKQSASEQVSGCLSNEKLINQFQLASQNIQNELPATPQCDSGNGCQTGEGSCLKQSASEQVSGCLSKEKSINQFQPASQNIQNELPATPQCVLGNGCQTGEGSCLKQSASEQASGCLSNEKSIDQFQPASQNELSATPQRDLGSGCQIREVSYLMESVSEPVSGCLSNEKSINQFQPASQNIQNELPATPQRDLGNGCQIREVSCLKESVSEPVSGCLSNEQSINKFRPASQNIPNEHLATLQCDSRNVCQIGEGSCLKQSVSERVLGCLANDKSIDKLQLASQNTQNEPVEVNDAVISFRVKDQMQSVTAEGTTGNGNELLNLPSGDVAKSNSCDSMERTSKRAMHIKLGRRKKIASNSLKKKYMLRSLVSNGRAMRSKTREKTKVPESNTNLVNVRNDGEKSKRGRKKKKRRLGEGVADEFLRIRAHLRYLLNRVSYEQNLIEAYSGEGWKGYSLDKLKPEKELQRAKSEILQRKLKIRDLFQHLDQLCAEGRLPESLFDSEGEIDSEDIFCAKCGSKDLSTGNDIILCDGACDRGFHQFCLEPPLLTENIPPDDESWLCPGCDCKDDCIELLNESFGMSLSIGDTWERVFPEAAVAAGNNVDKKLRLPSEDSDDDDDDDYNPNASEDMDIIGYESNSEESDYASASEKLDDQRKENQYVGLPSDDSEDDEYDPDVLDSDKKVIEESSSSDFTSDSEDLTATIRDNMFSEQDEDPVSASSGDIKQFKVSGRQRFTAGTRHTLADELSSLLELDPGQEGSAPVSGKRHVERLDYKKLYDETYKNIEYDTSDDEDWTDTATASRRKKLTRKVTPVSPNGKSSAEDHIQKETAHTPARNISHNKVENTSNTPLEGSRISPSSDKRPRSSTHKRLGEAVLQRLYKFFKENQYPDRVTKESLAQELGLTFQQVNKWFSNTRWSFQHPLHRRASSDRNALGQATCSKAENQESLGGEERDHELATQERSGEKSKPRRGRKRKSESDPKASDANIDSAATQPPAGSSGAQKVQRGHRMKKRRRKSFQDAFGTLGFSYYGANILIDKRRCNGWIQVLNGLEGKLVWTQIRNHESLPKQRKEGKRVGELKMEVEVDEKDLKAAGAELFAGDGRRGLRIHGWEIETRKLSILNSSTAHEWEQKLQTSHLPEMVFGENSLILKHVNSGTKILFNAFDALRGWKQEALPPVEVPAAAKWKFRSKPSQQVILDYDYTFTTPYCGSGTIEIDKDKNGDISEENSNLKWEDCKEKIDVVALAFKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLIRLRDTRMHCVFGGTANPVILRETCWRESTFQALSAKGHPFDSSAYSDPSVISQTLPVIMHQTQKFTVST 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0422 1450 ProSitePatterns Zinc finger PHD-type signature. 594 645 IPR019786 -
Dere06g0422 1450 Pfam TIP41-like family 1224 1414 IPR007303 GO:0043666
Dere06g0422 1450 MobiDBLite consensus disorder prediction 724 744 - -
Dere06g0422 1450 MobiDBLite consensus disorder prediction 1013 1027 - -
Dere06g0422 1450 Pfam Homeodomain 955 998 IPR001356 GO:0003677
Dere06g0422 1450 SUPERFAMILY FYVE/PHD zinc finger 583 651 IPR011011 -
Dere06g0422 1450 SMART HOX_1 942 1008 IPR001356 GO:0003677
Dere06g0422 1450 SUPERFAMILY Homeodomain-like 943 1002 IPR009057 -
Dere06g0422 1450 MobiDBLite consensus disorder prediction 871 953 - -
Dere06g0422 1450 MobiDBLite consensus disorder prediction 453 494 - -
Dere06g0422 1450 MobiDBLite consensus disorder prediction 913 937 - -
Dere06g0422 1450 Coils Coil 718 738 - -
Dere06g0422 1450 CDD homeodomain 943 998 IPR001356 GO:0003677
Dere06g0422 1450 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 362 1097 - -
Dere06g0422 1450 ProSiteProfiles Zinc finger PHD-type profile. 591 648 IPR019787 -
Dere06g0422 1450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 650 IPR013083 -
Dere06g0422 1450 Pfam PHD-finger 593 648 IPR019787 -
Dere06g0422 1450 MobiDBLite consensus disorder prediction 1028 1049 - -
Dere06g0422 1450 FunFam Homeobox protein HAT3.1 574 652 - -
Dere06g0422 1450 MobiDBLite consensus disorder prediction 1066 1083 - -
Dere06g0422 1450 CDD PHD_PRHA_like 593 645 IPR045876 -
Dere06g0422 1450 MobiDBLite consensus disorder prediction 687 757 - -
Dere06g0422 1450 Gene3D - 899 998 - -
Dere06g0422 1450 ProSiteProfiles 'Homeobox' domain profile. 944 1004 IPR001356 GO:0003677
Dere06g0422 1450 MobiDBLite consensus disorder prediction 939 953 - -
Dere06g0422 1450 SMART PHD_3 593 646 IPR001965 -
Dere06g0422 1450 MobiDBLite consensus disorder prediction 1005 1099 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0422 Dere-ChrDere06 6498060 6509867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0422 489 1001 Homeobox Transcription Factor Family AT3G19510 46.211 1.28e-127 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Dere06g0422 TIP41 1.3e-58 No_clan