Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0350 ATGCAAGGTCACGGAAGGACTATAGGGCCCTTTCCTGCGGTTGTAAGTATGATGCAGGAGCCTAGTTCTAGTGGCACTGATATGAATCAGCAGACTTCCTTGAATCACATCCAAAATCCAGTAGATGCTCGATTGTCAGACTTTATGGGATCTTCTGGTGAGAGTGCATGTTTATGTGCCGGCGGTCCCAGTGTTCAGAGCTTCAGTGGATGGAATACTGGTGAACCTAGTTCTGGCCTGAATCTCCACAGCCAAGTCAATGATGATGGGCTAAAAGCTGAACATGGATGGTCTTCTCCATGTGGTGCTCACGCTGAGGATAGTCTCAGACCTGAAGAAAGGCAATGTGAATCAAACAATGCAACTTTTCCTGGGGGCTCAAATACTAATTTTCATGGAAATCAATCCAGAATTCAGCCTTTCTTCTTGCAAGGTTCCAGCTCAAATCGTGCAACCCATAACGTGAATATGGGTCCCATTGCCAGCACTGCTAATCGTGGGAAGGGAACTGAAGCTTGTAGCAGTGATAATATCCACAATGCTCGTGGATTAGATAGAGAGCAGACATCATTTGGCAGTGCTTCTTGTGATCATATAGGAACTTCATCTGGAAGCTCTAATTACATGGCTGGGGGAGATAATGCTAGTTCAAGTTCTTTAGTTAACTGGGGTTCTTCCTGCAAGAGAAAGGCTCTTGAAAGTACTTCTGGGCAGCTGTGTACTGGAGGAGCTTCAAGCTCTTTTCTAGAAGCTGAAAACAGTTCCTGGCCTACTGGGACTGCCAATCCTAATAATGCTTCAAGCAATTTAAATGTTTCGAGGCCTTCTGAGGATATTCGTATTACTAATCCTCCAGTACAGCAGAACCTGAGAAACGAAGCGAGGCAAATGACTTCTGATGCCTTCCCTTTGATGGGTGTCATGGGAAATGTGAACAGACCTCTGAGAAACTTTGATAGGAGAATGAATTATGCACAGCGTCATGAATCTAGGGCTCCTAATTATTCTTCTTCCCGTCGAACACCTAGCTCTCACCCATTTAATGATTCTCTGGAATTAAGGTTAACAGCTGGAGTTACAGCAGCCAATTCTAGCGCTCCTCAGTGCCAGTCACATGTCATGCACATGCCTGGTTTGCCGGGGAACACACATCCTTTTGCTTGGAATGCAGCTGCTAGTTCAAGAGGGGCCAGTTCTTCAACTCCTTATAACTCTGCAGAAGGAGAAGTTCATGAAGAATTGAACTTAAGAATTTTCCCAAGAGACAATACTGAGCACCCCATCCTTGTGCCTGCATCTTCTGGACTTGACCCTACAAGTTGGCATATGTCATCTGGCAATGTGAACAACTCTGGAGATGTACCTCTTCCATCTTGGATTGGATCCAGTTCAAGTGTCCACTCGCTGCCTAATCCCAGCTGGATTGTTCCCCATGAAGTCCCAACACAGAGCCAGCAAAGATTATCAGAGTTCAGTCCCTGGTCCTTTTTTCCATCAGTGAGCTCAGTATCTGGTGCTCATAATGGTCATTCTGCCTCCTCTTCTTCTGGTCCTCCTTCCTTCACACAGGAGACGACCAACCATCAGTCTTATCCAAGATCAGCATCATTGTCAGACAGAAGAGGTGATGACGTTTTTAGTGCTCCCCATTCATTGCGGGCTTTAGCTGTTGACATTGAGGGGAGACGCCGACTGATATCTGAGATTCGTCAAGTCTTAAATGCAATGCGTAGGGGTGAGAACTTGCGAGCTGAGGATTATTTGCTCTTTGATCCTTTCATATATCATGGTATGGCTGAAATGCACGACAGGCACCGAGACATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGCTGGCATTGGAGGAGCGCATAGGAGATGTGAGCACTGGATTGAGTGAGGATAACATTATGAGGTTGATGAAACATCGAATCTACGTGTCTCTCATGACTGAGTCTTCCACAGATCTGGAACCCTGCTGTATCTGTCAGGAGGAATATGCTGATGGAGAGGATGTAGCTTCACTAGATTGTGGACATGAATTCCACACCAACTGCATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCCATTTGCAAAACAACAGCCTTAGCTACGTGA 2130 0.4587 MQGHGRTIGPFPAVVSMMQEPSSSGTDMNQQTSLNHIQNPVDARLSDFMGSSGESACLCAGGPSVQSFSGWNTGEPSSGLNLHSQVNDDGLKAEHGWSSPCGAHAEDSLRPEERQCESNNATFPGGSNTNFHGNQSRIQPFFLQGSSSNRATHNVNMGPIASTANRGKGTEACSSDNIHNARGLDREQTSFGSASCDHIGTSSGSSNYMAGGDNASSSSLVNWGSSCKRKALESTSGQLCTGGASSSFLEAENSSWPTGTANPNNASSNLNVSRPSEDIRITNPPVQQNLRNEARQMTSDAFPLMGVMGNVNRPLRNFDRRMNYAQRHESRAPNYSSSRRTPSSHPFNDSLELRLTAGVTAANSSAPQCQSHVMHMPGLPGNTHPFAWNAAASSRGASSSTPYNSAEGEVHEELNLRIFPRDNTEHPILVPASSGLDPTSWHMSSGNVNNSGDVPLPSWIGSSSSVHSLPNPSWIVPHEVPTQSQQRLSEFSPWSFFPSVSSVSGAHNGHSASSSSGPPSFTQETTNHQSYPRSASLSDRRGDDVFSAPHSLRALAVDIEGRRRLISEIRQVLNAMRRGENLRAEDYLLFDPFIYHGMAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDNIMRLMKHRIYVSLMTESSTDLEPCCICQEEYADGEDVASLDCGHEFHTNCIKQWLMQKNLCPICKTTALAT 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0350 709 SUPERFAMILY RING/U-box 646 706 - -
Dere06g0350 709 MobiDBLite consensus disorder prediction 327 348 - -
Dere06g0350 709 MobiDBLite consensus disorder prediction 147 177 - -
Dere06g0350 709 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 223 707 IPR045191 GO:0061630
Dere06g0350 709 FunFam E3 ubiquitin-protein ligase MBR2 629 707 - -
Dere06g0350 709 MobiDBLite consensus disorder prediction 115 135 - -
Dere06g0350 709 MobiDBLite consensus disorder prediction 250 279 - -
Dere06g0350 709 MobiDBLite consensus disorder prediction 91 135 - -
Dere06g0350 709 Pfam Ring finger domain 662 703 IPR001841 -
Dere06g0350 709 MobiDBLite consensus disorder prediction 505 543 - -
Dere06g0350 709 MobiDBLite consensus disorder prediction 329 348 - -
Dere06g0350 709 SMART ring_2 662 702 IPR001841 -
Dere06g0350 709 ProSiteProfiles Zinc finger RING-type profile. 662 703 IPR001841 -
Dere06g0350 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 707 IPR013083 -
Dere06g0350 709 MobiDBLite consensus disorder prediction 505 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0350 Dere-ChrDere06 5202696 5206536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0350 18 709 C3H Transcription Factor Family AT2G15530 37.585 9.44e-122 378