Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0348 ATGTTACCCTTATGTTACTTCTCTCAATTGTCACTGGGATTTCAGGAATTGCTGGCATTGGAGGAGCGCATAGGAGATGTGTGCACTGGATTGAGTGAGGATAACATTATGAGGCTTGTCAATGACTGCATTTATTTTGTCCAACAATGGCAGGAGGAATATGCTGATGCAGAGGATGTAGCTTCACTAGATTGTGGACATGAATTCCACACCAACTGCATCAAGCAGTGGCTAATGCTGAAGAACCTGTGCCCCATTTGCAAAACAACAGTCTTAGCTACGTGA 285 0.4386 MLPLCYFSQLSLGFQELLALEERIGDVCTGLSEDNIMRLVNDCIYFVQQWQEEYADAEDVASLDCGHEFHTNCIKQWLMLKNLCPICKTTVLAT 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0348 94 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 93 IPR013083 -
Dere06g0348 94 SUPERFAMILY RING/U-box 52 92 - -
Dere06g0348 94 Pfam RING-H2 zinc finger domain 58 88 IPR024766 GO:0008270
Dere06g0348 94 ProSiteProfiles Zinc finger RING-type profile. 43 88 IPR001841 -
Dere06g0348 94 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 16 92 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0348 Dere-ChrDere06 5110712 5111162 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0348 11 94 C3H Transcription Factor Family AT2G15530 45.192 1.15e-25 97.1