Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere06g0342 | ATGATGGAGGAGGAGGCTCAAAATATTGTTGTCTTGCCTTTATGCAAGAAAGTGAACGTGGAAGTGTCTGAAAATGGAGAAAAATTAGTAAAAGGACAATACACTATTGCACCAATTCTTTCAAGACCATTCAATGACCCAACATATCAGGAGCGCATAGGAGATGTGAGCACTGGATTGAGTGAGGATAACATTATGAGGTTGATGAAACATCGAATCTACGTGTCTCTCATGACTGAGTCTTCCACAGATCTGGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGAGAGAATGTAGCTTCACTAGATTGTGGACATGAATTCCACACCAACTGTATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCCATTTGCAAAACAACAGCCTTAGCTACGTGA | 408 | 0.4216 | MMEEEAQNIVVLPLCKKVNVEVSENGEKLVKGQYTIAPILSRPFNDPTYQERIGDVSTGLSEDNIMRLMKHRIYVSLMTESSTDLEPCCICQEEYADGENVASLDCGHEFHTNCIKQWLMQKNLCPICKTTALAT | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere06g0342 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 133 | IPR013083 | - | |
| Dere06g0342 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 88 | 129 | IPR001841 | - | |
| Dere06g0342 | 135 | FunFam | E3 ubiquitin-protein ligase MBR2 | 55 | 133 | - | - | |
| Dere06g0342 | 135 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 50 | 133 | IPR045191 | GO:0061630 | |
| Dere06g0342 | 135 | Pfam | Ring finger domain | 88 | 129 | IPR001841 | - | |
| Dere06g0342 | 135 | SMART | ring_2 | 88 | 128 | IPR001841 | - | |
| Dere06g0342 | 135 | SUPERFAMILY | RING/U-box | 70 | 132 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere06g0342 | Dere-ChrDere06 | 4899482 | 4901915 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere06g0342 | 51 | 135 | C3H Transcription Factor Family | AT2G15530 | 61.364 | 1.26e-33 | 121 |