Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0333 ATGAAGTCTGCATTACTGATGTCTTCAGACTCATCAGAACAGAAGGGAAAGCATATGACCGAATCAAATGCTAACTTGCTTCAATGTCCTTTAAACCAGCAACTTTCTAACTCCTTGGATGGCCCCGTGGCTATCCTTTGGGATATTGAAAATTGCTCAGTTCCACATGACGTCCGCCCTGAAGACGTGGCTGGTAATGTAAGAATGGCTTTACGGCAGCATCCAGTAATTGAAGGAACTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCCTTCCCCAGGCGACTCAGAGAAGGCTGCCAAAGAACTGGCGTTAAACTCATTGATATTCCCAGTGGAAGAAAGGATGCTGCTGATAAAGCTATCTTGATTGACATGTTCTTGTTTGCCCTTGACAACCGTCCACCCTCTTCTATCATGCTCATATCTGGAGATGTGGATTTTGCTCCCGCACTTCACATTCTTGGTCAACGAGGATATTCTATCATTCTCGTCATCCCTGCAGGGGTGGGTATTTCATCTGCCCTTCGCAATGCTGGTAAATTTGTGTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGCTTTCTGCTCCCTTCAAAGGCTGTGGTGCCACCTCATGTGGGTCCAACAGAGGTTGCTGGATATTTGATAGGGTGCCATATCAAGGACAACCCTGATGGACAAAACGAAGAAGAAGCTACTGCATATAGAGGTATCTCACAGAACCATCATAACTCCAGGGTTTCCTCATCTGTGTCACAGTCTCTGTCGGAATACAATAGTGGTACACTGAACGTGTCTTGCTCTCCAACGGCTTTGAGGTCACATAGCCTTCCATCCACATTGAATAATGTTTCAGGAGGACCTATGTCTTCTTCTAGTGACCAAAATGAAAATCGGTTATGTATACAGCCTGGGGATTTGAATGGTCTCGAGGGTCATCTGGTAAGTTTGCTTAAACTTTCTGGAGGATGCCTGCCTCTAGGCCATGTTCCAGCAGAGTATCAAAAATATTTTGGGAGGCCTCTCTGTGTATCAGAATATCGGATATATAAACTAGAGGAGCTTTTCAAGAAAATGGGCCACACATTGGCTGTGGAAGAGAAAGGTTCTCAGAAATTTGTACATCTTCGAAACTGGAAAGCAGGCCCAAGTGCTTCCTCTTTGTCTCAGGTGGGAAGAGATAAGAAAGGAAAGGGGGTTCAACATGAGAATGTGGATATTGTCACTGCTGGTTGCTCTTTGACTAAGTTATCAGATAAAGAAAGAATAATCATAGAAGAACATGATGAGAGAAGCAGCATAGCAAAGGGTTACCAAGGGAAAGCAGCCAGTTGTGAAATTGACGACAGTATTATTGAGCAGTTCAACCACAAGCTGCAAGAGACTCAACAGAAGGTTGAGCTTAGCAAACAGTGCCATGAGGGACATCTAAAGGAGAAGGAGAGGCTAGTTCGAATGATGGGCAATAAAGAGATATATCAAGAGAGAGTTCTCAGTCGCCGTCAAGCAGAATTTAACAGATTAGGAAGAGAAAGAGAGGAGCGACTCTCTAGGATTTTGCAGTCCAGGAGACAGGAGCGAGAAAAGACGAGGAAATTGAAGTTTTATCTGAAATTAGAAGAAGAGAGACAACAAAAATTGCATGAGGAGGAGGAATCTGGAAAGCGTGGAGAGGCTGAGAGGCTAGCGAGAGAACGCCTAGCAGAATTAGAACAAAGGCTGAGGCGAAGAGAGGAGGAACAAGAGAAGGAGAGGCGAAAGGAGGCGAGGGAACGCCTAGCAGATTTAGAAGAAAGGCTGAGGCAAAGAGAGGAGGAACAAGAGAAGGAGAGGGGAAAGGAGGTGAGGGAACGCCTAGCAGATTTAGAGGAAAGGCTGAGGCAAAGAGAGACTGAAGCAGCTTTGAAACCTTCTGAACCTCCCCGTCCATTGGATACAGGAAGATTAAAATACGTCCCTAAGTTCAGACGTGAGAGAGTCGAAGCCACAGCTCCCCGTGATACGGGAAAATTAAAATACGTCCCTAGGTTCAGACGTGAGAGAGTCGAAGCCGCAGCTTCTCCAACGCAAACTGATAGGTGGACTTACACTTTCAGCAAGTAG 2109 0.4557 MKSALLMSSDSSEQKGKHMTESNANLLQCPLNQQLSNSLDGPVAILWDIENCSVPHDVRPEDVAGNVRMALRQHPVIEGTVMMFSAYGDFNAFPRRLREGCQRTGVKLIDIPSGRKDAADKAILIDMFLFALDNRPPSSIMLISGDVDFAPALHILGQRGYSIILVIPAGVGISSALRNAGKFVWDWPSIARGEGFLLPSKAVVPPHVGPTEVAGYLIGCHIKDNPDGQNEEEATAYRGISQNHHNSRVSSSVSQSLSEYNSGTLNVSCSPTALRSHSLPSTLNNVSGGPMSSSSDQNENRLCIQPGDLNGLEGHLVSLLKLSGGCLPLGHVPAEYQKYFGRPLCVSEYRIYKLEELFKKMGHTLAVEEKGSQKFVHLRNWKAGPSASSLSQVGRDKKGKGVQHENVDIVTAGCSLTKLSDKERIIIEEHDERSSIAKGYQGKAASCEIDDSIIEQFNHKLQETQQKVELSKQCHEGHLKEKERLVRMMGNKEIYQERVLSRRQAEFNRLGREREERLSRILQSRRQEREKTRKLKFYLKLEEERQQKLHEEEESGKRGEAERLARERLAELEQRLRRREEEQEKERRKEARERLADLEERLRQREEEQEKERGKEVRERLADLEERLRQRETEAALKPSEPPRPLDTGRLKYVPKFRRERVEATAPRDTGKLKYVPRFRRERVEAAASPTQTDRWTYTFSK 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0333 702 MobiDBLite consensus disorder prediction 1 21 - -
Dere06g0333 702 Coils Coil 562 634 - -
Dere06g0333 702 CDD PIN_limkain_b1_N_like 42 168 - -
Dere06g0333 702 MobiDBLite consensus disorder prediction 280 301 - -
Dere06g0333 702 MobiDBLite consensus disorder prediction 628 653 - -
Dere06g0333 702 Pfam NYN domain 42 182 IPR021139 GO:0004540
Dere06g0333 702 Gene3D - 309 377 IPR041966 -
Dere06g0333 702 Pfam OST-HTH/LOTUS domain 312 373 IPR025605 -
Dere06g0333 702 Gene3D - 37 188 - -
Dere06g0333 702 PANTHER LIMKAIN B LKAP 9 519 IPR024768 GO:0005777|GO:0010468
Dere06g0333 702 ProSiteProfiles OST-type HTH domain profile. 308 380 IPR025605 -
Dere06g0333 702 CDD LOTUS 316 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0333 Dere-ChrDere06 4703067 4706674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0333 43 193 C2H2 Transcription Factor Family AT5G61190 43.791 4.44e-29 122