Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0312 ATGGACAACTATTTGAGCAGCGACGACGATTACCATTACTCCGATCAGGGCTCCGTCGACGGCTTCGAAAACGACGAGCCCGATATTCAGTTGGTCACTCCCAAGGGTCCCACAACTCTGGTGATTACAAAGGAATCACTTCTAGCTGCACAGAAAGAAGATTTGCGCAGAGTAATGGAAATGCTATCATTAAGAGAGCACCATGCACGTACTCTGCTTATTTATCATCGTTGGGATGTGGAGAAATTGTTTGCAGTGTATGTAGACAAGGGAAAAGCTGCCTTGTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATTGTGATCCTGATCCATCAGTTCCTTCGTCGGTAATGTGTTATATCTGTATAGAGGATGTTCCTGGTCATGAAGCAACAAGAATGGACTGTGGTCACTGTTTTTGCAACAGCTGTTGGACATCACATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGGTGCATGGCTCACAAATGTAATGCTATTTGTGATGAAGCTGTTGTTAGAAATCTAGTCAGTAAAAAGCACCCTGATATGGCAGAGAAATTTGACCGGTTTCTTCTTGAATCCTACATTGAAGACAATAAAAGAGTCAAATGGTGCCCCAGCACCCCTCATTGTGGGAATGCAATACGTGTTGAGGATGATGAATTGTGTGAGGTAGAATGTTCTTGTGGTTTACAGTTTTGTTTTAGTTGCTTGTCAGAGACACACTCCCCATGTTCATGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAGCAGTTCATACGAAACCTTGTCCAAAATGCCACAAGCCAGTGGAGAAGAATGGTGGTTGCAACTTGGTTAGTTGTATCTGTGGCCAAGCATTTTGTTGGTTGTGTGGCGGAGCCACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAACAGCTAGAGAAAACAGCTGAACGAGCGAAGCGAGATCTGTATCGGTATATGCATTATCACAATCGCTATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAATTGAAAGAGACTATTCAAGGGAGGGTTGCTATTTCAGAAGAGAGGGATTCTACACTTAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCAAGGCGTGTCCTATCGTATTCATATCCATTTGCATTTTATATGTTTGGAGATGAGCTATTTAAGGATGAAATGCCAGAAGAGCAGAGGGAAATAAAACAGCACTTATTTGAGGATCAGCAGCAGCAGCTTGAGGCAAATGTTGAAAGGCTCTCCAAAATTCTCGAGGAACGCTTTGACCAGTTTACAGATGATAAGATTATGGAGATTAGGATACAAGTCATCAACCTCTCCACGATTATTGACAATCTGTGCCAGAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTCCAACTGGGCATTCACAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCATCAGAACTTTCAGCTTGTTGGAGCCATAAAGCCAATAATACTGGTGGAAAAGCAGAACTTGATCGGCCTTCTGGGTCTGGGAGTTCAGATGAGAGTGGATGCCCTTCTCATAAGCGTCCTAGGAAAGAAGGTGCTGGTGGTGTCCTTTTTGATCTAAACTTGCCAGCAGAGCATTTGGACGCAGTTGATGCTGATGCTAGTTGGAGAGGGAAGCTTATCCTTCTAGTGACTCTAGGGAGTTATGAACTTCTCAATGATGGCATTAGGACTCGCATAATATTTGGGAAGAGTTTGGTTCTGAACAAGCAACTTGCCCATCTCTATCGGCAAAACTGGCCAATTAGAATAGGCACTGATGCCCATCTTATGCGAAGGGTACAAGTACCACCAGAAAAGCTGTATTTGCAGAAGGCATTTTCTTTTTTCTCTTTTCTTCCACATAGGATTGTTGGAAGAGGATGA 2010 0.4299 MDNYLSSDDDYHYSDQGSVDGFENDEPDIQLVTPKGPTTLVITKESLLAAQKEDLRRVMEMLSLREHHARTLLIYHRWDVEKLFAVYVDKGKAALFAEAGVSVDEHCDPDPSVPSSVMCYICIEDVPGHEATRMDCGHCFCNSCWTSHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPDMAEKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFSCLSETHSPCSCLMWELWAKKCRDESETVNWIAVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKQLEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQGRVAISEERDSTLRDYSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMPEEQREIKQHLFEDQQQQLEANVERLSKILEERFDQFTDDKIMEIRIQVINLSTIIDNLCQKMYECIENDLLGSLQLGIHSIAPYKSKGIERASELSACWSHKANNTGGKAELDRPSGSGSSDESGCPSHKRPRKEGAGGVLFDLNLPAEHLDAVDADASWRGKLILLVTLGSYELLNDGIRTRIIFGKSLVLNKQLAHLYRQNWPIRIGTDAHLMRRVQVPPEKLYLQKAFSFFSFLPHRIVGRG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0312 669 Gene3D - 248 495 - -
Dere06g0312 669 CDD BRcat_RBR_ANKIB1 197 261 - -
Dere06g0312 669 SMART ibrneu5 190 252 IPR002867 GO:0008270
Dere06g0312 669 SMART ibrneu5 260 325 IPR002867 GO:0008270
Dere06g0312 669 SUPERFAMILY RING/U-box 116 202 - -
Dere06g0312 669 MobiDBLite consensus disorder prediction 530 558 - -
Dere06g0312 669 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Dere06g0312 669 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270
Dere06g0312 669 CDD Rcat_RBR_ARI1-like 274 326 - -
Dere06g0312 669 SUPERFAMILY RING/U-box 190 258 - -
Dere06g0312 669 FunFam RBR-type E3 ubiquitin transferase 248 495 - -
Dere06g0312 669 Pfam Ariadne domain 331 576 IPR045840 -
Dere06g0312 669 FunFam RBR-type E3 ubiquitin transferase 114 204 - -
Dere06g0312 669 CDD RING-HC_RBR_TRIAD1 117 170 - -
Dere06g0312 669 SUPERFAMILY RING/U-box 260 317 - -
Dere06g0312 669 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 402 IPR031127 GO:0004842|GO:0016567
Dere06g0312 669 MobiDBLite consensus disorder prediction 1 16 - -
Dere06g0312 669 MobiDBLite consensus disorder prediction 1 28 - -
Dere06g0312 669 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Dere06g0312 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0312 Dere-ChrDere06 4498389 4503581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0312 59 548 ARIADNE family AT2G16090 72.874 0.0 751