Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0306 ATGATCATTCTCATCATGATGATAGTTCCACCTTCTTCTCCTGCTTCTTCTCAGCCACCCCTTCTTCACTTTCACCACTGGGACCCATCCCCATCCCCATCCCCTTCTCCTTCTCCTTCTCCTTCTCCCACTCTATCGCCGGCCGGTTCTCCGGCCACCGCTGCGCCGACTTTCCTGACTGTTTCCACCAACAAATCATCACCTGCGGCGTCGAAGTTGCCGGTTGACTTCAGTCCGCCTCTGATTGCAATGGTGGTTGTCGTAGCCACTGCCTTCCTCATCGTCACCTATTCCCGCCTCATCTCCCGCCACCTCATTCCACCAATTATCAGCCTCGCTCGCCGGTGGAGCCGCCGCCGGCGACGCTCCTACCTCCCCTCCTCCTCCGGCGACCTTGAATCCCTCCCTTACGACTCCCCCTTTGAGGCAATCGATGGTCCCCATGTGTTCTCTCCTTATGGTCTCGACGAGTCTGTCATTAAGACCATACCGTTTTCGCTCTACACCGCCAAATCCAACGGACAATTCGAAGAGTCTCGACGCGATTGCGCGGTGTGTTTGTTAGAATTCGAAGACGACGACTATGTTCGCACGCTACCTTTTTGCTCTCACACTTTCCACGTGGATTGCATCGACGTCTGGTTGAGGTCACACGCGAATTGCCCTCTCTGCCGCGCCGGAGTTCTGTGCGCGGAGTCTCCGTTCACGCCGATGATGGCGGCTAGGATTCGGCCGAGCCTCGACGACGACACGATTTTGCACAGAATCAGTATGGAGCCTCTGGTCGAAGCTCCATCGCCAGTGGCTCACTCTCTGGTCTCGGAGATCACTCCTTGCATTGAAGACCAATCACCGAGAAGGAACAACGCGAATTCGGAGGACCAATTCAACGGCGGCCGCGATTTCCTCCTGAAGCGATCCTACTCGTTTGGATTCGAACGGAGCTTGCCGTCGGAGAGAATGGTGATGGAGCCGGCGACGGCGTCGCCTTGGCGGTACCACCGCAGGGGAAGTAGCAGCAGCTTCTGGAGCAAAAGGCCATCGCCGTTTGGATCATTGGGGAAGCCTAGAGTGTTCTCGTTCAGATACTACAGAGGTATGAAGTCGCCGTTCTTCCGGCGACGTGGGTTCTTCCCTTTATCAGAGTCAAGCATGAGGTCATACGGCGGCGGAGGAAGCTCCTCCCGGCGAAGCAAGTCGATAGCAAGCCCAATGTTTCTCAGGTCATCGGCGGCTTTAGCAGCGGCCGGAGTGGCTGCTTTCTCATCAAGCCGTCTCAGGTGCGGCGATCCCGAGGCATTGCTGTCACCGGAGAGGTATAACCGGAGATGA 1332 0.5668 MIILIMMIVPPSSPASSQPPLLHFHHWDPSPSPSPSPSPSPSPTLSPAGSPATAAPTFLTVSTNKSSPAASKLPVDFSPPLIAMVVVVATAFLIVTYSRLISRHLIPPIISLARRWSRRRRRSYLPSSSGDLESLPYDSPFEAIDGPHVFSPYGLDESVIKTIPFSLYTAKSNGQFEESRRDCAVCLLEFEDDDYVRTLPFCSHTFHVDCIDVWLRSHANCPLCRAGVLCAESPFTPMMAARIRPSLDDDTILHRISMEPLVEAPSPVAHSLVSEITPCIEDQSPRRNNANSEDQFNGGRDFLLKRSYSFGFERSLPSERMVMEPATASPWRYHRRGSSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSMRSYGGGGSSSRRSKSIASPMFLRSSAALAAAGVAAFSSSRLRCGDPEALLSPERYNRR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0306 443 PANTHER RING-H2 FINGER PROTEIN ATL16 64 253 IPR044600 GO:0016567|GO:0016740
Dere06g0306 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 229 IPR013083 -
Dere06g0306 443 Pfam Ring finger domain 182 225 IPR001841 -
Dere06g0306 443 ProSiteProfiles Zinc finger RING-type profile. 183 225 IPR001841 -
Dere06g0306 443 MobiDBLite consensus disorder prediction 19 52 - -
Dere06g0306 443 FunFam RING-H2 finger protein ATL65 148 229 - -
Dere06g0306 443 MobiDBLite consensus disorder prediction 30 46 - -
Dere06g0306 443 SUPERFAMILY RING/U-box 175 230 - -
Dere06g0306 443 SMART ring_2 183 224 IPR001841 -
Dere06g0306 443 CDD RING-H2_EL5-like 182 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0306 Dere-ChrDere06 4441759 4443090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0306 74 443 C3H Transcription Factor Family AT3G18930 52.736 1.29e-96 294