Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0290 ATGAAGAAGGAGGACAAGTTGAAGACAGAGGACAACGGAAGAAATCACCGGCGGCGATCGACCTTGCCGGAGGGGAAGCCGGCGCACTTTTTCAAGATCATACTTCCGACTACGATTCTTGATAAAAAACTGAGAATTCCTGCGACGTTTTTGAAAGACCACGGGGATGATTTCTCTTCCATTGTTACCTTATCTGATCCTAACGCTCGAGAATGGAAATTGGGTTTGCAGAGGAGTGAAGATGATGTTTGGTTCTGCAAAGGTTGGGATAAATTTGTCGAATATTACTCTATCAGCAAGGAGAACTTTCTGGTTTTCAGATACGAAGGAAACTCGAAATTCCATGTTCTAATATTCGACATGGGTGGTTCAGAAATTCGATACCCTTCCCACGATCCAAACCATAACATAGAATGCGAGGAAGACGAGGTTGTCTCATTGGAATCAATAAAGAGAAATGACGATGATTATCATTGGAATGATAATGCTAATGATGATGATGATGATTATCACTTTACTGAAGAAGATTATACTGATCATGGGGATGATTTTACCGATGATAATGATGATGAAGATGATGATTTTACTGCTTATAATAGCTCTTCTCCCTCCAAATCCCCTTCCCCGTTTACTCCAAAAAGACGAGGTTTCACCGTTTTCATCGACCAAAGCTCAAAAAGAGAAAGAGAGAGAGAAATAGAAAAAGAAAAAGGGTATGCATCTTCTTCAAAATCTGCATTCAGAAGAAAAGGAAAGACGACTGAACGTAGTGTTAGTGAGAGTGATGATCCAAGCGATTCATGGAGTGAAGGAGCTTGGAATCTCGGAAGATCCAAAGGTGGTGATGAGTGCTGTAGATGCAGAAGAGGTAAGTATGGAGTGAGAGTGGAGAAAGAGGAACACGTGGCATGGGTTCGGAGAGAAACATTGAAGTCAAAATCATACAAAAAGAGGCATATATCAGCTAGAGAAAGTGACAAGGTCATGCAAGCTGCTCGCAAGTATAGATCTGAGTTTCCTTCTTTCAGGGCTGTCTTGAGGCCTCACAACTTGTACAACAGTTTTGTGTACGTGCCTGCCCGTTTTGCTCTGAAGTATCTGGATGGTCGGTCCCAAATCATAAGACTTGAGAACTCGGACGGAAGGCAGTGGGGAGCTCGATGCTTTTCCAGGAAGGGTTCAGGTTGTGGAATGAGCATAGGCAGAGGATGGGCTAGGTTTGCGGTGGACAATGGTCTCAAGGAAGGAGATGCCTGTGTCTTCGAGCTCGTCAAGAAGAAGAAGAACATTGTGCTGAAAGTTAAAATATTTCGTGTTAGTGAATATTCACAAAGCTGA 1338 0.4275 MKKEDKLKTEDNGRNHRRRSTLPEGKPAHFFKIILPTTILDKKLRIPATFLKDHGDDFSSIVTLSDPNAREWKLGLQRSEDDVWFCKGWDKFVEYYSISKENFLVFRYEGNSKFHVLIFDMGGSEIRYPSHDPNHNIECEEDEVVSLESIKRNDDDYHWNDNANDDDDDYHFTEEDYTDHGDDFTDDNDDEDDDFTAYNSSSPSKSPSPFTPKRRGFTVFIDQSSKREREREIEKEKGYASSSKSAFRRKGKTTERSVSESDDPSDSWSEGAWNLGRSKGGDECCRCRRGKYGVRVEKEEHVAWVRRETLKSKSYKKRHISARESDKVMQAARKYRSEFPSFRAVLRPHNLYNSFVYVPARFALKYLDGRSQIIRLENSDGRQWGARCFSRKGSGCGMSIGRGWARFAVDNGLKEGDACVFELVKKKKNIVLKVKIFRVSEYSQS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0290 445 Gene3D - 320 443 IPR015300 -
Dere06g0290 445 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Dere06g0290 445 SMART B3_2 342 440 IPR003340 GO:0003677
Dere06g0290 445 SMART B3_2 30 122 IPR003340 GO:0003677
Dere06g0290 445 MobiDBLite consensus disorder prediction 197 211 - -
Dere06g0290 445 MobiDBLite consensus disorder prediction 156 280 - -
Dere06g0290 445 Pfam B3 DNA binding domain 346 439 IPR003340 GO:0003677
Dere06g0290 445 Pfam B3 DNA binding domain 30 120 IPR003340 GO:0003677
Dere06g0290 445 CDD B3_DNA 29 120 IPR003340 GO:0003677
Dere06g0290 445 Gene3D - 22 123 IPR015300 -
Dere06g0290 445 MobiDBLite consensus disorder prediction 220 263 - -
Dere06g0290 445 MobiDBLite consensus disorder prediction 160 196 - -
Dere06g0290 445 SUPERFAMILY DNA-binding pseudobarrel domain 25 121 IPR015300 -
Dere06g0290 445 PANTHER B3 DOMAIN-CONTAINING 24 434 - -
Dere06g0290 445 SUPERFAMILY DNA-binding pseudobarrel domain 336 440 IPR015300 -
Dere06g0290 445 ProSiteProfiles B3 DNA-binding domain profile. 341 440 IPR003340 GO:0003677
Dere06g0290 445 MobiDBLite consensus disorder prediction 1 23 - -
Dere06g0290 445 CDD B3_DNA 340 438 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0290 Dere-ChrDere06 4225731 4229409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0290 30 441 B3 DNA Binding Superfamily AT3G18990 29.717 2.42e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere06g0290 B3 4.7e-19 CL0405