Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0289 ATGCCTCGCCCTTGTTTCTGTAAGCTTATTCTTCCATCCACCGTCCGAGCCAGCCAACTGAGGATTCCAGATAATTTTTTGAGGAAGCTTGGGGGTGAGATCTCAACAATTGCTACCTTTAATGTTCCTGATGGCAGTATTTGGCGTGTTGGATTAAAAAAGGCAGACAACAAATTTTGGTTCCATGATGGTTGGCAAGAATTTGTTCAACGTTACTCCATTGGCATCGGATACTTCTTGGTGTTCAGATATGAAGGGAATTCATCCTTCAATGTTTATATTTTCAATTTGGCTACTTCTGAGATAAACTATCAATTAGCCACGCGAAGCAGTAATGAGGGCCTTTACTTCACCAATCAACATCATATCTTTGATGAAATGGAAGATGAAGACTCTGTTGAATACTTGGATTCAACACCTTCACGTCAAACTCCCGGTGCATTTCATAACAAGGGTTTTGCTGGATCTGCAGATCAATTGACACCTGGCAAGAATTATACTTCTCCGTCATTGCAGAATTTGTTTAATGGGTCTAAACTTAATAGCGTAAACTGGGGAGACAGTGGAAGTGCCATTTCTTCAAAGGGTGCCAATTCTCAAAATATTCAATTGACCAAAGATAAAGGTGTTCAGTTTAATGCAGCTGAGTTTAAAAGGTCTACTGAAGAGTTGAAGTTGCATGCTTCCAATGACGAAATGCAGAGAGTTAAGAAAACTGTGAGAAAGAAGCGGAAAACTGATCCTGATGGTGAAGAATCCTCCCCTCATCATGAAGAGGAGGTGGAAATTCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCAGTTAACGCTGCAAAAGCATTTGAACCACCTAATCCTTTCTGTAGAGTTGTCCTGCGACCCTCCTATTTGTACAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGCATTTAAATGGGGTTTCTGGATTTATCAAACTTCAGATTTCTGATGGAAGGCAGTGGCCGGTTCGCTGCCTTTATAGAGGGGGTAGAGCGAAGTTAAGCCAGGGGTGGTTTGAATTTGCCCAGGATAACAACCTTGGGGAAGGTGATGTCTGCGTTTTTGAGCTGCTTGGAATGAGAGATGTAGTGCTGAAAGTTACTATATTCCAAGTCCTTGAGGATGATGTGGGATTACTGAACCCTCCCATGCCGCAAAACCAAAATATCAGCCCATCCTCCAAACTTTTGAACACACCCTTGCAGCGAAACGTGAGCCCTATCAAACTGATTAGAAATTAG 1308 0.419 MPRPCFCKLILPSTVRASQLRIPDNFLRKLGGEISTIATFNVPDGSIWRVGLKKADNKFWFHDGWQEFVQRYSIGIGYFLVFRYEGNSSFNVYIFNLATSEINYQLATRSSNEGLYFTNQHHIFDEMEDEDSVEYLDSTPSRQTPGAFHNKGFAGSADQLTPGKNYTSPSLQNLFNGSKLNSVNWGDSGSAISSKGANSQNIQLTKDKGVQFNAAEFKRSTEELKLHASNDEMQRVKKTVRKKRKTDPDGEESSPHHEEEVEIRFRFYESASARKRTVTAEERERAVNAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISDGRQWPVRCLYRGGRAKLSQGWFEFAQDNNLGEGDVCVFELLGMRDVVLKVTIFQVLEDDVGLLNPPMPQNQNISPSSKLLNTPLQRNVSPIKLIRN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0289 435 CDD B3_DNA 4 96 IPR003340 GO:0003677
Dere06g0289 435 PANTHER B3 DOMAIN-CONTAINING 3 382 - -
Dere06g0289 435 SMART B3_2 6 98 IPR003340 GO:0003677
Dere06g0289 435 SMART B3_2 300 395 IPR003340 GO:0003677
Dere06g0289 435 ProSiteProfiles B3 DNA-binding domain profile. 300 395 IPR003340 GO:0003677
Dere06g0289 435 MobiDBLite consensus disorder prediction 228 258 - -
Dere06g0289 435 SUPERFAMILY DNA-binding pseudobarrel domain 293 393 IPR015300 -
Dere06g0289 435 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Dere06g0289 435 Pfam B3 DNA binding domain 303 392 IPR003340 GO:0003677
Dere06g0289 435 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Dere06g0289 435 Gene3D - 277 396 IPR015300 -
Dere06g0289 435 Gene3D - 1 98 IPR015300 -
Dere06g0289 435 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Dere06g0289 435 CDD B3_DNA 298 392 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0289 Dere-ChrDere06 4217985 4221429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0289 1 400 B3 DNA Binding Superfamily AT3G18990 50.121 1.61e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere06g0289 B3 1.1e-17 CL0405