Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0279 ATGGGTTCGGTTCCTGCAGAACTGAGCTTAGATTTGAGACCCACTTTTGTTCCCAAGACGATCAGTGATTTTCTCTACGAGGTTTCCACGATCGGAAACGCCTCCGACAAGTCGTCGAGGCTCGATGAGTTTCTCAAGAGATTGGAAGAGGAAATGCGGAAGATCGACGCTTTTAAGCGCGAGCTTCCTCTCTGTATGCTCCTCTTACATGATGCAATCTTAACTCTGAAGGAGGAATCAGCAAAATTTAGAACACCTATTTCTCAGCCAGTGTTGGAAGAATTTATTCCCTTGAAGAAAGAATGTGATCTGAAAGAGGAAGATAAAAAAGAAAAGGAGTGCAGAGATAAAAAGAATTGGATGAGTTCTGTTCAGCTCTGGAATACTGATAGTCATCCCTCTATTAATAATTCCTATGAGCAAAAACATTATAAATTAGAAAATAAGAAAATCGAAGAGGAAGGACAATATCTGGCTGAGTACCCATTTCAATCTCATAGAAACAAAAATCATGGCTGTAGGGGGTTTTTGCCCTTTTCAACCTACTCTTCCATTCCCGTGACAACAGTGGCAACTAAGGAAGAGAAAGACGACTCCATTAATGGGCTTTCTCTTCTGACCCCTGGTATTAAAACTTTGAGGGAAGGTTCTGGTTCAAGTGGATCGAGAAGCAGCTCTAGTAGGGCAGTTTCCTCCTCTACTCCCAGTGTACAGCCAACTATCACCACATGTCATCAGCAGCCACAGCAACATCCTGCCCGGAAACAGAGGAGGTGCTGGTCGCCAGAGTTGCACCGCCGATTTGTCAATGCTCTACAGCAACTTGGAGGCTCTCAAGCAGCAACCCCAAAGCAAATTAGGGAACTAATGCAAGTTGATGGCCTGACCAATGATGAAGTGAAGAGTCATTTACAAAAATATCGACTTCACACTCGAAGAGTACCAGCTACCACGGCTGCACCTGCTAATCAATCTGTTGTAGTTCTTGGAGGTTTGTGGATGTCCCAAGATCAGCAAAATGACTCCTCAAAGGCTAGCAGTTCTGGGTCTGGTTCTCCTCAAGGTCCCCTCCAGTTAGCAGCATCTGGTGGAGGGACTTCCTTGTCCCCAACTGAAGGTGACAGCATGGAAGATGATGAAGATGAAAAATCTGAGAGCTTTAGCTGGAAAGGTCACATTCACAAATCTGGAAAAGATGATGTATAG 1206 0.4444 MGSVPAELSLDLRPTFVPKTISDFLYEVSTIGNASDKSSRLDEFLKRLEEEMRKIDAFKRELPLCMLLLHDAILTLKEESAKFRTPISQPVLEEFIPLKKECDLKEEDKKEKECRDKKNWMSSVQLWNTDSHPSINNSYEQKHYKLENKKIEEEGQYLAEYPFQSHRNKNHGCRGFLPFSTYSSIPVTTVATKEEKDDSINGLSLLTPGIKTLREGSGSSGSRSSSSRAVSSSTPSVQPTITTCHQQPQQHPARKQRRCWSPELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPATTAAPANQSVVVLGGLWMSQDQQNDSSKASSSGSGSPQGPLQLAASGGGTSLSPTEGDSMEDDEDEKSESFSWKGHIHKSGKDDV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0279 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 312 IPR017930 -
Dere06g0279 401 MobiDBLite consensus disorder prediction 337 372 - -
Dere06g0279 401 FunFam Myb family transcription factor 254 312 - -
Dere06g0279 401 MobiDBLite consensus disorder prediction 210 258 - -
Dere06g0279 401 Coils Coil 41 61 - -
Dere06g0279 401 MobiDBLite consensus disorder prediction 337 401 - -
Dere06g0279 401 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 310 IPR006447 GO:0003677
Dere06g0279 401 MobiDBLite consensus disorder prediction 383 401 - -
Dere06g0279 401 MobiDBLite consensus disorder prediction 213 254 - -
Dere06g0279 401 Pfam Myb-like DNA-binding domain 257 308 IPR001005 -
Dere06g0279 401 Gene3D - 254 312 - -
Dere06g0279 401 SUPERFAMILY Homeodomain-like 253 313 IPR009057 -
Dere06g0279 401 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 390 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0279 Dere-ChrDere06 4111745 4113851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0279 6 334 G2-like Transcription Factor Family AT2G03500 39.884 2.34e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere06g0279 Myb_DNA-binding 6.5e-07 CL0123