Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0265 ATGGCTCAGCCAACTTCTGACGGCGCCGATCTGAATCAGCAGCAGCAGCAATGGACGCAGCCGAATCAGTATCACCAGCAATGGATGAACATGCAGTATCCGGCGTCGGCTATGGCGATGATGCAACAGCAGATGATGATGTATCCGCCGCATTACATACCTTACGTTCATCATTATCAACCGCCATATCACAACCCGCAGCTGAAGCCGCCGCAGCCGCAGCAGCACCACCAGCAGGGCTCCGCCGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTCCATAGCTGCTTTGCTCACACAGGCGAGGTATTTTCAGTCAAGGTTATACGAAATAAGCAAACCGGTCAGTCAGAGGGATATGGATTTGTTGAGTTTTATTCGCGTGTGACAGCTGAGAAAGTTTTGCTGAGCTATAATGGTATTATGATGCCAAATACAGATCAGCCATTTCGCCTAAATTGGGCTGCATTTGGTACTGGTGATAGGCGATCAGATGCTAATTCAGATTACTCTATATTTGTGGGGGACTTGGCTGCAGATGTTACTGATGCTAAGCTGCAGGAAACCTTTGCAAGCAGATATTCATCTGTTAAGGGAGCAAAAGTTGTTATTGATTCTAACTCTGGCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAAAATGAGAGGTCCAGGGCAATGACTGAAATGAACGGTACATATTGTTCAAATAGGCCAATGCGAATAAGTGTTGCAACACCCAAAAAATCATATGGACATCAGCAACAATACTCTTCACAAGCCGTGGTGTTGGCTAATGGACATTCTTCTAATGGTGCTGTGGCCCAAGGTTCCCAGTCCGAAGGGGACTATAGTAACACAACTATATTTGTTGGAGGCCTTGATTCTGACGTCAGTGATGAAGATCTCAAACAACCATTTTTGCAATATGGTGAGGTTGTCTCTGTGAAGATACCGGTGGGAAAAGGGTGTGGTTTTGTTCAATTTGCTAACAGAAAGAATGCAGAGGAAGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAGTAAGCATTGGAGGACGGATTCCAATGGAGGGCAGGGTTATGTTGTGAGACAGCATCAGGATATGAAAACGCATGCTGCTGCTTAA 1203 0.463 MAQPTSDGADLNQQQQQWTQPNQYHQQWMNMQYPASAMAMMQQQMMMYPPHYIPYVHHYQPPYHNPQLKPPQPQQHHQQGSADEIRTIWLGDLHHWMDENYLHSCFAHTGEVFSVKVIRNKQTGQSEGYGFVEFYSRVTAEKVLLSYNGIMMPNTDQPFRLNWAAFGTGDRRSDANSDYSIFVGDLAADVTDAKLQETFASRYSSVKGAKVVIDSNSGRSKGYGFVRFADENERSRAMTEMNGTYCSNRPMRISVATPKKSYGHQQQYSSQAVVLANGHSSNGAVAQGSQSEGDYSNTTIFVGGLDSDVSDEDLKQPFLQYGEVVSVKIPVGKGCGFVQFANRKNAEEAIQALNGTVIGKQTVRLSWGRSPGSKHWRTDSNGGQGYVVRQHQDMKTHAAA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0265 400 CDD RRM3_NGR1_NAM8_like 297 368 - -
Dere06g0265 400 MobiDBLite consensus disorder prediction 1 20 - -
Dere06g0265 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 258 IPR000504 GO:0003723
Dere06g0265 400 FunFam Polyadenylate-binding protein RBP47 280 398 - -
Dere06g0265 400 Gene3D - 277 397 IPR012677 -
Dere06g0265 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 155 IPR000504 GO:0003723
Dere06g0265 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 251 IPR000504 GO:0003723
Dere06g0265 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 363 IPR000504 GO:0003723
Dere06g0265 400 SMART rrm1_1 180 254 IPR000504 GO:0003723
Dere06g0265 400 SMART rrm1_1 299 366 IPR000504 GO:0003723
Dere06g0265 400 SMART rrm1_1 87 162 IPR000504 GO:0003723
Dere06g0265 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723
Dere06g0265 400 Gene3D - 168 271 IPR012677 -
Dere06g0265 400 SUPERFAMILY RNA-binding domain, RBD 178 371 IPR035979 GO:0003676
Dere06g0265 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 166 IPR000504 GO:0003723
Dere06g0265 400 Gene3D - 85 165 IPR012677 -
Dere06g0265 400 CDD RRM2_SECp43_like 178 257 - -
Dere06g0265 400 FunFam Polyadenylate-binding protein RBP47B 167 269 - -
Dere06g0265 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 75 374 - -
Dere06g0265 400 CDD RRM1_SECp43_like 87 167 - -
Dere06g0265 400 FunFam Polyadenylate-binding protein RBP47B 85 165 - -
Dere06g0265 400 SUPERFAMILY RNA-binding domain, RBD 46 166 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0265 Dere-ChrDere06 3945146 3949344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0265 270 367 Eukaryotic Initiation Factors Gene Family AT4G34110 32.692 7.07e-07 49.3