Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0257 ATGGTGGTTTCCAAGTCAACATACGAGGAATGCAGGCGTCAAAGGCTAGAAGAAAACAAGAAGAGAATGGAGGAGCTCAACCTCAACAAGCTTGCTAGCGCTTTAAAACCTTCACCATCACCCAAGCCTTCCCCTGCCAAGCCGAGGGCGCCACGTCAGCTAGTGAGCCCTTCTTCTGCTCCAGTAAGAAGGTCTAATCGCGTTGCCAGCTTACCTTCTCCAAACTACAAGGAAGTCCCACTTGAACCTTTGCAGAGACCACGAAGGTCCTATCAAAGAAGGGACCTGCTAAATCGAGTTTATGCTTCAGATGAAGTTAGGCAATATGCAATTGATAGAGCAGAAGAACTTCAATCTGGTTTAAATTCTAAATACCCAAGTTTTATCAAGCCTATGTTGCAATCACATGTTACTGGAGGATTTTGGCTAGGTCTCCCACTTCATTTCTGCAAAGATCATCTCCCTCACCATGATGAAACAATAACTTTAGTAGATGAGGATGGGAACGAGTCACCAACCAAGTACCTTGCTGATAGAACAGGTCTCAGTGGCGGTTGGCGAGGTTTTGCAATTGATCATGAACTAGTTGATGGGGATGCATTGGTGTTTCAATTGATCAAACCCACTAAATTTAAGGTGTTCATAATGAGAGCATATGAATCAGAAAACAAAGAGGAAAAAGATGAGGATTTGGATGCTACACACTTGAACAGGAGCTCCAAGAGGATCAGAGCAAGTAACTCCCTTTCATTGCTCTTTACTCTAATTACTTTGTTTCTGTGA 783 0.4342 MVVSKSTYEECRRQRLEENKKRMEELNLNKLASALKPSPSPKPSPAKPRAPRQLVSPSSAPVRRSNRVASLPSPNYKEVPLEPLQRPRRSYQRRDLLNRVYASDEVRQYAIDRAEELQSGLNSKYPSFIKPMLQSHVTGGFWLGLPLHFCKDHLPHHDETITLVDEDGNESPTKYLADRTGLSGGWRGFAIDHELVDGDALVFQLIKPTKFKVFIMRAYESENKEEKDEDLDATHLNRSSKRIRASNSLSLLFTLITLFL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0257 260 CDD B3_DNA 126 215 IPR003340 GO:0003677
Dere06g0257 260 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Dere06g0257 260 SUPERFAMILY DNA-binding pseudobarrel domain 121 217 IPR015300 -
Dere06g0257 260 Coils Coil 13 33 - -
Dere06g0257 260 SMART B3_2 128 220 IPR003340 GO:0003677
Dere06g0257 260 Pfam B3 DNA binding domain 128 215 IPR003340 GO:0003677
Dere06g0257 260 MobiDBLite consensus disorder prediction 1 87 - -
Dere06g0257 260 MobiDBLite consensus disorder prediction 8 27 - -
Dere06g0257 260 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 50 223 IPR044837 -
Dere06g0257 260 MobiDBLite consensus disorder prediction 58 72 - -
Dere06g0257 260 Gene3D - 104 221 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0257 Dere-ChrDere06 3806634 3807923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0257 1 254 B3 DNA Binding Superfamily AT3G19184 55.594 1.61e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere06g0257 B3 1.2e-15 CL0405