Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0254 ATGGAAGATGAAGACGAAGTCGTCTCGTGTTCTTCCGCTTCCGATGACGACGACGACTTCGCGGGTGAATTTGAAGAAAGCCTCGACGAGGATGACCGAACGGAGGCCCATTTTTTCTCTCCGCCCGATGACGAGAGGAAATCGAAGAATGTCGATGCTCTTGTGAGGGGCAACCTCGTCGTGAAGAAACAATCGGTTCTTCCACGAGTTCTTTCTGTAACACAAGGAGCAGCTGTTTGTCGAAAACCCTTTAAACCTCCCAGCTCCAATGGTTACAATAATAGAAATGAAGAACTTACACGTCGCCTCTGGGCTCGGAAAAGGTTTGTGCCATGGGGCTCTACCAGACCAGCATTGGTTGCGATTACCAACCGGTTGAATACATCAATGAACGTTGAAAAAGATGTTGTCGACGAGGAAGTGTCTTTGCCACCTGGGATTGATCCTTTAGTGTTGTGGCAGCCTGAAGACTTTGAGGATGAGGGTCGTAATTTGACACCAATAGCTGTGGACCCATTGCTTGTTCGTTTTCTTAGACCACACCAGAGAGAAGGGGTTCAGTTTATGTTTGAATGTGTTTCTGGGCTATGTAGCGCAGCAAATATTCATGGGTGTATCCTTGCAGATGATATGGGTTTGGGGAAGACGTTGCAGTCAATCACATTACTGTATACCCTTCTTTGTCAAGGGTTTGATGGAAAGCCAATGGTTAGAAAAGCCATCATTGTGACCCCTACCAGCCTTGTAAGCAATTGGGAAGCTGAAATTAAGAAGTGGATTGGAGACAGAGTTCATCTTGTCGCTCTATGTGAAAGCACAAGAGATGATGTCATATCTGGGATTGACAATTTTACAAGTCCCTACAGCTCTTTACAGGTGCTGATTGTTTCATATGAGACATTCCGAATGCATTCATCAAAATTTAGCCATAGTGACTCTTGTGACCTACTTATATGTGATGAGGCTCACAGGCTGAAAAATGATCAGACAATAACAAACCGGGCATTGGCTGCTCTCTCATGCAAACGTAGAATTTTGTTGTCAGGAACTCCTTTGCAGAATGACCTAGAAGAATTCTTCGCAATGGTTAACTTCACTAATCCTGGAATATTGGGTGACATTGCACACTTTCGCCGTTACTTTGAGGGACCGATTATTTGTGGGAGAGAACCTACTGCCTCTGCAGATGAGAAGAAGCTAGGTGCTGAACGCTCTGCGGAGCTAAGTGCGAAAGTAAACCAGTTCATATTAAGAAGGACTAATGCATTATTATCAAATCACCTGCCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCGCTGCAGTCAGACCTATATAAACATTTTTTACAATCCAAAAATGTTAAACGGGCAATTGTTGAAGACGTAAAGCAATCGAAGATTTTAGCCTACATAACAGCTCTCAAAAAGCTGTGCAACCATCCGAAGCTTATATATGACACCGTACGAAGCGGGAGTCCAGGAACATCAGGTTTTGAGGACTGCATTCGGTTCTTCCCACCAGAGATGTTTTCTGGAAGATCTGGCTCATGGACCGGAGCAGATGGAGCGTGGGTCGAGTTGTCAGGAAAAATGCATGTCTTAGCAAGATTACTTGCCCAGTTACGGCAGAGGACCAACGACCGCATTGTTCTTGTCTCAAACTACACACAGACTCTGGATCTTTTTGCTCAATTGTGTCGGGAACGAAGATATCCGCACTTGAGGCTTGATGGCGCTACTTCAATCAGTAAAAGGCAGAAGTTAGTCAACCGCTTTAATGACCAATCTAAGGACGAATTCGTTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCCTCAATTTAATTGGAGGAAATCGATTAGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTGTACATCTATAGATTTTTGAGTGCGGGGACAATTGAGGAAAAGGTCTACCAGCGTCAGATGTCTAAAGAAGGGTTACAAAAGGTCATTCAGCATGAGCAAACAGATAACCTTGCGACAGAGGGTAACTTTCTTTCGACAGAGGACCTCCGCGATCTGTTCACATTTCATGAGAGTGCCAAGTCAGTTATTCATGAAAAGATGTATTGCACTCGGTGCCTGACATATGATGGGCCTCCGATCAATGGTGGGAAACATGCAGCTGAATCAACAATAAGTAACGGTGAATCTGATGAAGAAACCACTGATGATATAGGTGGATTTGCAGAAATTGCAGGCTGCTTACAGAAGTTAAAGAGATCAGAAAAGCAGGTAGGGACCCCCTTGGAAGAAGATTTAGGTAGCTGGGGCCATCACTTCTTTCCAACATCTGTACCAGATGTTGTCCTTCAGGCTTCAGCCGGAGATGAGGTGACCTTTGTTTTCACAAACCAAGTCAATGGAAAGCTTGTACCGATTGATTCAACTATCAGTCCAAAGCTACAGCAAGAGGAACCAAGTAAGGAACTACTCAAGCCAAAGCAGAACATCAAACAAAATTCCATTCTTTCCTTACATCAGAAATCATCTTTGCAGTCTGCTTCTGGTGTTGCTATTTCATCATCTCACTCACTCAAGCCTTCAATGAGTCCAGCATTAAATTCTGTTAGAATTAACAAAAATATATCAACATATGCAGCCATAAAGGCTGAAAACTCCCTTGTAAATCAATTACCACAGAAAAGAGCATGTCCGGTTTTTGTTGATGATGATGATTTGGAATAA 2778 0.4363 MEDEDEVVSCSSASDDDDDFAGEFEESLDEDDRTEAHFFSPPDDERKSKNVDALVRGNLVVKKQSVLPRVLSVTQGAAVCRKPFKPPSSNGYNNRNEELTRRLWARKRFVPWGSTRPALVAITNRLNTSMNVEKDVVDEEVSLPPGIDPLVLWQPEDFEDEGRNLTPIAVDPLLVRFLRPHQREGVQFMFECVSGLCSAANIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWIGDRVHLVALCESTRDDVISGIDNFTSPYSSLQVLIVSYETFRMHSSKFSHSDSCDLLICDEAHRLKNDQTITNRALAALSCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYFEGPIICGREPTASADEKKLGAERSAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFLQSKNVKRAIVEDVKQSKILAYITALKKLCNHPKLIYDTVRSGSPGTSGFEDCIRFFPPEMFSGRSGSWTGADGAWVELSGKMHVLARLLAQLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGATSISKRQKLVNRFNDQSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQHEQTDNLATEGNFLSTEDLRDLFTFHESAKSVIHEKMYCTRCLTYDGPPINGGKHAAESTISNGESDEETTDDIGGFAEIAGCLQKLKRSEKQVGTPLEEDLGSWGHHFFPTSVPDVVLQASAGDEVTFVFTNQVNGKLVPIDSTISPKLQQEEPSKELLKPKQNIKQNSILSLHQKSSLQSASGVAISSSHSLKPSMSPALNSVRINKNISTYAAIKAENSLVNQLPQKRACPVFVDDDDLE 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0254 925 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 369 IPR014001 -
Dere06g0254 925 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 693 IPR001650 -
Dere06g0254 925 MobiDBLite consensus disorder prediction 1 47 - -
Dere06g0254 925 Pfam SNF2-related domain 181 487 IPR000330 GO:0005524|GO:0140658
Dere06g0254 925 CDD DEXHc_RAD54 178 419 - -
Dere06g0254 925 Gene3D - 441 710 - -
Dere06g0254 925 FunFam DNA repair and recombination protein RAD54 149 418 - -
Dere06g0254 925 SMART ultradead3 174 377 IPR014001 -
Dere06g0254 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 726 IPR027417 -
Dere06g0254 925 MobiDBLite consensus disorder prediction 31 47 - -
Dere06g0254 925 CDD SF2_C_SNF 530 658 - -
Dere06g0254 925 FunFam DNA repair and recombination protein RAD54-like 524 695 - -
Dere06g0254 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 419 IPR027417 -
Dere06g0254 925 Gene3D - 419 726 IPR027417 -
Dere06g0254 925 Pfam Helicase conserved C-terminal domain 538 646 IPR001650 -
Dere06g0254 925 Gene3D - 154 418 IPR038718 -
Dere06g0254 925 PANTHER SNF2/RAD54 FAMILY MEMBER 62 832 - -
Dere06g0254 925 SMART helicmild6 563 647 IPR001650 -
Dere06g0254 925 FunFam Predicted protein 441 515 - -
Dere06g0254 925 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0254 Dere-ChrDere06 3771372 3779711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0254 133 667 RAD5 or RAD16-like Gene Family AT3G16600 24.510 1.44e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere06g0254 SNF2_N 2.7e-53 CL0023