Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0227 ATGATTGATGGGAAAGCAGATAAGAATTCCTTGGTTGAAAAATTGTATCGCTTTGAAACTCTGCAATTATGTCCACCGGGTAGCCTAATGACTCCAGCTTTGTCATCTGGCCTGTTTCCAGACTCTGCCATTGCTGATGAGTTGGTGAAACAAAAGGGGCCATCAGTTGAGTGCCATTGCAATTCTTGTTCTGCAGATTGTTCTCACAAACGCTACCATTGCCAGAAACAGGCTGATTTTGATCTATGTACCGATTGCTTTAGTAATGGAAAATTTGGATCTGGCATGTCTTCATTGGATTTTATACTCATGGAGCCAGCTGAAGTTCCAGGGGTTAGTGGTGGAAAGTGGACTGATCAGGAGACCCTTTTGCTTCTTGAAGGACTTGAACTTTATAAAGGAAAATGGACTGAAATTGCCGAGCTTGTTGCAACAAAGTCAAAAGCTCAATGTATATTACACTTTGTTCAAATGCCAATTGAGGATGCCTTTATTGATTCCAGTGGCCAAGTGCTGATTCCTCACAAGGAAAACTCTAAGGCTGAAGATGCTAATAAAGTGGAAACTCCAAAGCCAGAAGATGGCGGTGATGAAAAAATTGAAGAGGAAATTTTTAAAACAGAAGATGCTGCTGAAGTGATATATGGTCACGAAGCAGGCAACTCTTGTGCTTTAAACACTCTTATGGAAGCATTTGAAGCCATTGGTTACTCTGCTAGACTTGAAGGCCCATCTTCATTTTCTGAAGTGGATAATCCTGTCATGGCATTGGCAGCTTTCCTTGCAGGCATGGTGGATTCTGATGTGGCAGTTGCTTCAGCTCATGGTTCTTTAAAATCTATATCCATAAATTCTCCCAGCATTAAGCTTGCATCAAGACATTGCTTTCTTCTGGAAGATCCCCCAGACGATAAGAAGGAACCAAATAATTCTGAGAGGGATATTAGAAAGGACAGAGAACAGGATGACATAAATGGAAAACAAGATAACTCAGCATTACACAATAAAGATTTATCACTTGGTTGCACTTGCAATGACAAGAAAAGTCATGGTGCTTTAGAAGATCAGAAACAGCAGGCTTCTACAGATGATGAAGCCTCCAAAAACCCTATTTTTTCAAAGGAGCAATGA 1131 0.4067 MIDGKADKNSLVEKLYRFETLQLCPPGSLMTPALSSGLFPDSAIADELVKQKGPSVECHCNSCSADCSHKRYHCQKQADFDLCTDCFSNGKFGSGMSSLDFILMEPAEVPGVSGGKWTDQETLLLLEGLELYKGKWTEIAELVATKSKAQCILHFVQMPIEDAFIDSSGQVLIPHKENSKAEDANKVETPKPEDGGDEKIEEEIFKTEDAAEVIYGHEAGNSCALNTLMEAFEAIGYSARLEGPSSFSEVDNPVMALAAFLAGMVDSDVAVASAHGSLKSISINSPSIKLASRHCFLLEDPPDDKKEPNNSERDIRKDREQDDINGKQDNSALHNKDLSLGCTCNDKKSHGALEDQKQQASTDDEASKNPIFSKEQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0227 376 SMART zz_5 54 98 IPR000433 GO:0008270
Dere06g0227 376 CDD SANT 133 158 IPR001005 -
Dere06g0227 376 ProSitePatterns Zinc finger ZZ-type signature. 60 86 IPR000433 GO:0008270
Dere06g0227 376 ProSiteProfiles Myb-like domain profile. 109 159 IPR001005 -
Dere06g0227 376 Pfam Zinc finger, ZZ type 57 93 IPR000433 GO:0008270
Dere06g0227 376 PANTHER SWI/SNF COMPLEX-RELATED 113 359 - -
Dere06g0227 376 SMART sant 113 161 IPR001005 -
Dere06g0227 376 Pfam Myb-like DNA-binding domain 115 157 IPR001005 -
Dere06g0227 376 MobiDBLite consensus disorder prediction 298 330 - -
Dere06g0227 376 MobiDBLite consensus disorder prediction 348 376 - -
Dere06g0227 376 MobiDBLite consensus disorder prediction 176 197 - -
Dere06g0227 376 SUPERFAMILY RING/U-box 57 115 - -
Dere06g0227 376 ProSiteProfiles SANT domain profile. 112 163 IPR017884 -
Dere06g0227 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 151 IPR017930 -
Dere06g0227 376 SUPERFAMILY Homeodomain-like 111 165 IPR009057 -
Dere06g0227 376 Gene3D - 112 163 - -
Dere06g0227 376 MobiDBLite consensus disorder prediction 298 376 - -
Dere06g0227 376 FunFam SWI/SNF complex subunit SMARCC2 isoform C 113 163 - -
Dere06g0227 376 ProSiteProfiles Zinc finger ZZ-type profile. 55 109 IPR000433 GO:0008270
Dere06g0227 376 CDD ZZ_RSC8 59 102 IPR041984 -
Dere06g0227 376 Gene3D - 48 102 IPR043145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0227 Dere-ChrDere06 3148236 3150852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0227 26 155 EF-hand Containing Proteins AT3G07740 31.250 2.50e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere06g0227 Myb_DNA-binding 5e-11 CL0123