Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0208 ATGTTGCGCTGTCTGAACACTTCGGAGAATCTCGCCGGGTCCTGCTCCGAGATGATGGTGTTGGAAAGGCAAAGAGAAAGGATGAAATGGCAACAAGAACAGCAGTACCATCATGAGAACCAGAGCTACTTTTGCGGAAGTGGGTCCGACAGTGGGTTCTCGTCTCTGCAAGCTCAGAATTCTCAGGGGTTGACGATGATGATGATGATGATGAAGATGAATGGCGGCGGCGGCGGTGGAGGTGGTTCTGGGCTTGGTGAGGTATTTGCTAATGCTGGGTCGGTGAAGCCCGACCCGGGTTCGGAAAATGGATGGCCCGAATCGGTTAAGTTCGACGAGTCCGATATGGGTCTCATGTCTTCTGGGTTTGATGTAAGCTCTGCAATTTCAAGGACTTCTAGCCGCCCGCCATCTGTGGCGGCGGCAACACCAGTCGCCGATGCCCAAGGCAAAGACTCAGTCTCTTCGGCGGCGACGGAGAAGATGAGATCGACAAGTGGGAGAGAGAGCTTCAAGAAGAGGAAATCTGAGAAAGTTCACAATCCCAAGGTTGTTGCAGAAAATGAGAAAAACAAGAAGAAAAACAAAACAAATGGTGAGGAAGGGGAATCGAAAATCACAACAAATAATAATGGCAAGAACAGAGAAACATCTGCAGAATCTTCGAAGGAGAACTCGAAAGCGTCTGAGGTTCACAAGTCTGACTACATTCATGTCCGAGCACGTCGTGGACAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGGAGGGAAAAGATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTGCCTGGTTGTAACAAAATCACAGGGAAAGCTGGCATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTAGAGTTCTTGTCGATGAAACTAGCTGCTATAAACCCAAGGATTGACTTCAACATTGACGATCTGTTTACCAAAGAGGTTTTTCCTGCTTGTCCTCCTACGAGATTTCCAGCCCTAGAGATGACAATTAATCCTGCCTATCTTCAGTTTGATTCAGTACAACATGCTGCTTCATGTTCCGCATTAGATTTGGGGATAAACCCTCCAGATTTGGGGCTTCGAAGGGCCATTAGTGCCCCTGTATCCATGCCTCCCGAAACGTTTCTTGACTCATCCTGTTTCACTCAAATTCTACCATTTTCAACTTGTGAAGCTGATTTTCAAAACCTATACAATGTGGGTTTTGATCAAGCAAGATCAACAACGTCCTTTCCTTCTCAACCATTCACAGGTCTGATTGGAGCTAGCAATCTGAAGATGGAGATGTGA 1323 0.4633 MLRCLNTSENLAGSCSEMMVLERQRERMKWQQEQQYHHENQSYFCGSGSDSGFSSLQAQNSQGLTMMMMMMKMNGGGGGGGGSGLGEVFANAGSVKPDPGSENGWPESVKFDESDMGLMSSGFDVSSAISRTSSRPPSVAAATPVADAQGKDSVSSAATEKMRSTSGRESFKKRKSEKVHNPKVVAENEKNKKKNKTNGEEGESKITTNNNGKNRETSAESSKENSKASEVHKSDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAINPRIDFNIDDLFTKEVFPACPPTRFPALEMTINPAYLQFDSVQHAASCSALDLGINPPDLGLRRAISAPVSMPPETFLDSSCFTQILPFSTCEADFQNLYNVGFDQARSTTSFPSQPFTGLIGASNLKMEM 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0208 440 MobiDBLite consensus disorder prediction 202 216 - -
Dere06g0208 440 FunFam Basic helix-loop-helix transcription factor 242 314 - -
Dere06g0208 440 Gene3D - 242 315 IPR036638 GO:0046983
Dere06g0208 440 Pfam Helix-loop-helix DNA-binding domain 249 296 IPR011598 GO:0046983
Dere06g0208 440 MobiDBLite consensus disorder prediction 165 201 - -
Dere06g0208 440 MobiDBLite consensus disorder prediction 217 236 - -
Dere06g0208 440 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 150 340 IPR024097 GO:0006355
Dere06g0208 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 314 IPR036638 GO:0046983
Dere06g0208 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 295 IPR011598 GO:0046983
Dere06g0208 440 MobiDBLite consensus disorder prediction 94 113 - -
Dere06g0208 440 SMART finulus 251 301 IPR011598 GO:0046983
Dere06g0208 440 CDD bHLH_AtBPE_like 235 320 - -
Dere06g0208 440 MobiDBLite consensus disorder prediction 128 236 - -
Dere06g0208 440 MobiDBLite consensus disorder prediction 149 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0208 Dere-ChrDere06 2893147 2895626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0208 119 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 51.261 5.84e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere06g0208 HLH 2.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g0208 06 2893147 2895626 Dere06g0208 06 2893147 2895626 ECH
Dere06g0208 06 2893147 2895626 Dere04g0181 04 1877852 1879672 ECH