Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0171 ATGGCTAAACCAAAAGCTCCAAGGCGAACCCTAGAATCATACACTGTCAAACCCATTAACAAAACCATTAGAGCCGGCGACTGCGTGCTTATGCGGCCGTCTGATCCGTCGAAGCCGTCGTATGTGGCTAGGATCGAGCGGATCGAAGCCGACTCGCGTGGCGCCAACGTGAAGGTCCACGTCCGGTGGTACTACCGGCCGGAGGAGTCACTCGGCGGCCGGAGGCAATTCCACGGTTCTAAGGAGGTTTTTCTTTCTGATCACTTTGATGTTCAGAGCGCCGATACGATCGAATGCAAGTGTACGGTTCACAGTTTCAAAAGCTACACGAAGCTAGATGCTGTTGGAAACGAGGATTTCTTCTGTCGCTTCGAATACAATTCCGCCACTGGCGCCTTCAATCCTGATAGAGTCGCTGTGTACTGTAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAGAGTTGCAGCGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGACGAAGCCAAAATACTTGACCACTTCTTTTGTGAAAGCTGTTCTGCAGAAGATACTAAGGTGGATACAAATATCCGACGAAGGTGA 606 0.5 MAKPKAPRRTLESYTVKPINKTIRAGDCVLMRPSDPSKPSYVARIERIEADSRGANVKVHVRWYYRPEESLGGRRQFHGSKEVFLSDHFDVQSADTIECKCTVHSFKSYTKLDAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIDMTVDEAKILDHFFCESCSAEDTKVDTNIRRR 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0171 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 200 IPR013083 -
Dere06g0171 201 PANTHER OS08G0421900 PROTEIN 5 194 - -
Dere06g0171 201 Pfam PHD-finger 141 189 IPR019787 -
Dere06g0171 201 SMART BAH_4 21 137 IPR001025 GO:0003682
Dere06g0171 201 Gene3D - 2 135 IPR043151 -
Dere06g0171 201 SMART PHD_3 141 188 IPR001965 -
Dere06g0171 201 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Dere06g0171 201 SUPERFAMILY FYVE/PHD zinc finger 131 191 IPR011011 -
Dere06g0171 201 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Dere06g0171 201 Pfam BAH domain 22 136 IPR001025 GO:0003682
Dere06g0171 201 FunFam Chromatin remodeling protein EBS 1 133 - -
Dere06g0171 201 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0171 Dere-ChrDere06 2255234 2258628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0171 41 139 Core DNA Replication Machinery Family AT4G14700 29.293 5.29e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere06g0171 BAH 2.6e-22 No_clan