Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0161 ATGAAGATCCAATGTGATGTGTGCGAGAAGATGGAGGCATCAGTGTTCTGTGCTGCAGATGAAGCTGCTCTCTGCCATGGCTGTGATTGCAGCATCCACCATGCCAACAAGCTCGCAGGCAAACACATACGCTTCTCTCTTCTCCATCCCACCTCTAACGATATTCCTCTCTGTGATATCTGCCAAGAGAAGCGAGCATATCTGTTTTGCAAAGAAGACAGAGCAATACTATGCAGAGAATGTGACCTTATGATCCACAGAGCCAACGAACATACCCAGAAACACACTAGGTTTCTTCTCACAGGCGTGAAGCTCTCTGCTTTGTGTTTAGACCCACCTTCGTCCTCCTCCAACGCTACTACTACTACTGAATATAACAGAGTGAAAGATGATTATGGTGGAGCAAGAATTTCATCTCGTAACTCTTCGAACACAAACAGACACAGATCGGTTTCAAATGAGAATTTCAGTTCTTCCAATTCGGTGATGAATTCTGATACTATGGTCAGTGACACAGAAGCAGCTTCAACAAACAGCATTTCTGAGTACTTGATTGAGACAATACCTGGCTATTGCTTTGAAGACCTTCTTGATGCTTCGTTTCCGCCTAATGGTTTCTGTAAGAATCAGGAGCATAATTCAACTTTTCATGATCAAGATCTTCGAGTTAGGGTGTGTTTATATCCATTGCCAGCTTGGGTACCTCAAGCTCAGGCAAGTTCTAATGGTTCTGTTCTGTGGTAG 744 0.4382 MKIQCDVCEKMEASVFCAADEAALCHGCDCSIHHANKLAGKHIRFSLLHPTSNDIPLCDICQEKRAYLFCKEDRAILCRECDLMIHRANEHTQKHTRFLLTGVKLSALCLDPPSSSSNATTTTEYNRVKDDYGGARISSRNSSNTNRHRSVSNENFSSSNSVMNSDTMVSDTEAASTNSISEYLIETIPGYCFEDLLDASFPPNGFCKNQEHNSTFHDQDLRVRVCLYPLPAWVPQAQASSNGSVLW 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0161 247 CDD Bbox1_BBX-like 5 47 - -
Dere06g0161 247 CDD Bbox1_BBX-like 57 100 - -
Dere06g0161 247 FunFam B-box zinc finger protein 21 1 98 - -
Dere06g0161 247 Pfam B-box zinc finger 56 94 IPR000315 GO:0008270
Dere06g0161 247 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Dere06g0161 247 SMART bboxneu5 53 100 IPR000315 GO:0008270
Dere06g0161 247 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dere06g0161 247 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Dere06g0161 247 Gene3D Classic Zinc Finger 1 99 - -
Dere06g0161 247 MobiDBLite consensus disorder prediction 136 170 - -
Dere06g0161 247 SUPERFAMILY B-box zinc-binding domain 49 91 - -
Dere06g0161 247 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere06g0161 247 MobiDBLite consensus disorder prediction 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0161 Dere-ChrDere06 2141108 2143072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0161 1 216 C2C2-CO-like Transcription Factor Family AT1G75540 47.727 2.15e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere06g0161 zf-B_box 2.4e-08 No_clan