Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0150 ATGAAGAAAGACCATAATAGTTATAGTAAGAAGAAAGAGGAAAAAGATAAAGATAAACCAATAAACCAGCACTTGTCTCGCCCACGAATCTGCTTTTCTTTGTTTCAGTGCTTTCTTTCTATCCACCAAAAAAAAAAAACTTGTTCTTGTGAGGTTTTTCATCGTCTCTCTTTTCGTCTTCTTTCAGAAATGGAGGTTGTAGTAGCGGAAGCGTTGAAACCCAGTTTGCGAACAGAACTGGATTCCCAGCAAAAAGCGTTTTGCGAGGAAATCTTGTGCTTGAACGGAAACAACGGCGTCTCCGGTGAGGATTTCTCTGTGGATGACCTTCTTGATCTCTCCAATGGCGAATTTCAGCATGGGTTTGTTGAAAACGAAGATGATTTTGAAGACGACGAAGAAAAAGATGGTTCCTCTGTTTCGGACGATGTGAACTCCAACTCCGATAGTGTTTCCGGCACCGGCGATTCTGAGTCCGCTTTCGCAAGCGAACTCGCCGTTCCGGCCGATGATTTAGCAGACTTGGAGTGGGTTTCTCACTTTGTGGACGATTCTTTGCTAGAGCTCTCTCTGTTGTATCCAGTTCGTCCAGAGCAAGCAAAGTTGCTGCCGGAAAAACGGTCTGAACCGGAAACTAGACCGGCCCTAACCACGCCGAAAACTCCTTGTTTCCCCTCTGAGTTTCCTGTGAAAACGAGAAGCACCAAACCCAGAAAACCCAACGCTAGCGCCTGGTCAGTCAGCCCCTTACTTTCCATTTCCCGGCCGTCTTCGTCGTCGTCGTCTTCATGCCCTTCGCCTTCTCCTGCTATCGTCTTCGCCGGCGGACCGCCGGCGAAGAAGCAGAGGAAGAAGAAGAAGCAGCCGACGGAAGGCGAGGCAAGTGGGTCCCAGTTTCAGCGTCGGTGCAGTCATTGTCATGTGCAGAAGACTCCACAGTGGAGAACCGGTCCACTAGGTGCCAAAACTCTTTGTAATGCATGCGGCGTCCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTACAGACCGGCCTGTAGCCCAACCTTCTCAAGTGATATCCACTCGAACAGCCATCGCAAAGTGTTGGAGATAAGGAGGAGGAAGGAGATGGATAGACCGGAGGCCCGTTTGACCCAAACCCAAATGGTTCAAAGCTTCTGA 1161 0.4927 MKKDHNSYSKKKEEKDKDKPINQHLSRPRICFSLFQCFLSIHQKKKTCSCEVFHRLSFRLLSEMEVVVAEALKPSLRTELDSQQKAFCEEILCLNGNNGVSGEDFSVDDLLDLSNGEFQHGFVENEDDFEDDEEKDGSSVSDDVNSNSDSVSGTGDSESAFASELAVPADDLADLEWVSHFVDDSLLELSLLYPVRPEQAKLLPEKRSEPETRPALTTPKTPCFPSEFPVKTRSTKPRKPNASAWSVSPLLSISRPSSSSSSSCPSPSPAIVFAGGPPAKKQRKKKKQPTEGEASGSQFQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSDIHSNSHRKVLEIRRRKEMDRPEARLTQTQMVQSF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0150 386 MobiDBLite consensus disorder prediction 236 268 - -
Dere06g0150 386 MobiDBLite consensus disorder prediction 1 20 - -
Dere06g0150 386 Pfam GATA zinc finger 303 336 IPR000679 GO:0006355|GO:0043565
Dere06g0150 386 ProSiteProfiles GATA-type zinc finger domain profile. 297 333 IPR000679 GO:0006355|GO:0043565
Dere06g0150 386 ProSitePatterns GATA-type zinc finger domain. 303 328 IPR000679 GO:0006355|GO:0043565
Dere06g0150 386 SMART GATA_3 297 351 IPR000679 GO:0006355|GO:0043565
Dere06g0150 386 MobiDBLite consensus disorder prediction 124 157 - -
Dere06g0150 386 FunFam GATA transcription factor 293 380 - -
Dere06g0150 386 MobiDBLite consensus disorder prediction 203 302 - -
Dere06g0150 386 MobiDBLite consensus disorder prediction 141 157 - -
Dere06g0150 386 MobiDBLite consensus disorder prediction 124 138 - -
Dere06g0150 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 299 360 - -
Dere06g0150 386 CDD ZnF_GATA 302 359 IPR000679 GO:0006355|GO:0043565
Dere06g0150 386 Gene3D - 295 375 IPR013088 GO:0006355|GO:0008270
Dere06g0150 386 PANTHER GATA TRANSCRIPTION FACTOR 93 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0150 Dere-ChrDere06 1979489 1980933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0150 71 369 C2C2-Gata Transcription Factor Family AT5G66320 45.963 4.73e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere06g0150 GATA 5.2e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g0150 06 1979489 1980933 Dere06g0150 06 1979489 1980933 ECH