Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0139 ATGTACGAGTCTGCGACGAAAACCGTAGCAGTTTCCGAGGTATCGGGAGAGCAACCATCGTCCAACTCTAATGGGGCGACTGAGCAAACGCCGGAGCAACTCGTGGCCAGAGCCATAGCTCCTGTGAAGAAGGAGTTCCTTCGTCCTCCTCCTGTTCGAAATTCCTCTACAGCCCAGAACGACGATGTTTCTGAAGACAAGGATAAGGCCTCTGCTCAATCTGGGGGATTGGTGAAGGAGAAGAAGTCAAAGCGCCAACTCAAGCGTGAACGTCGTCAGGAACAAAAGTCTGCGAGAAACATCTGTCCAGAAGTTGCAAAGACAGGAGATGTTAGTTCATGTTCTTACAATGACAAATGCCGCTTCAGCCATGACTTAGAAGCCTTCAAGGCCCAGAAACCAACTGACCTAGAGGGAGAATGCCCTTTCTTTAAAGCTGAAGGTTCTTGCCCCTACGGGCTAGCATGTAGATTTTCAGGTACACATACAGAAGGTGTGCCTTCTGGCAATCTGAATGGTCGGAGGAAAAGTTCTGAAATAAATGGACTGAGCAAGGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGCGCTTCCCTAAGGCAGATGCCAAACTCAAAGTTCTTGGGCTATTAGCATCATCAAAGTCAAAAAGGAATGACTTGGAAGATAAGGAGGGTGGTGACACTGATTGCCACCAAGCTGATGATAATGGCTCTTGTGAAGTAACTAATGAATCAGAGTCTAAGTTAGAAAGCTCTGCAGAAGTCGCAAAAGATGATGGCGTTGACGAAAATTTTGAATCTGATTTACTTTGCCCGCAAAAGAGAAGAAAAGTTGAAGAAAACTCTGGTGTCGATGCGGCAGAAAATGAAGGTACGTGTGTTGCCAACCAAAATGTTGACGAAAGCTCCCTAAACCAAAATGTTGACGAAAGCTGCATACAAGCTGAACCGGAAACAGGAACTGAAGTAATACCCCCTGAAACTGATCAAAGCATGAAGTTACACCCACAAGAAAAGAAGCTTATTGATTTTAGGGAGAAGTTGTATCTTGCGCCCTTGACAACTGTTGGAAATCTCCCTTTCAGGAGGGTTTGCAAAGTATTAGGAGCTGATATAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCGGAATGGGCATTGCTGCGACGTCATTCATCTGAAGACATATTTGGTGTACAAATATGTGGGGCATTTCCAGATACTGTGACACGAACCATAGAACTGATAGAGCAGGAATGTACAATAGATTTTATTGACATAAATATGGGTTGCCCAATTGATATTGTTGTAAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGGATGAAAAATATTGTAGAAGTAGCTTCGAGCACTGTGGATAAACCAATAACTGTCAAGGTCCGGACAGCTTATTTTGAAGGGAAAAATCGCATTGATTCTATGATTGCAGACATTGGCTCTTGGGGAGCCAGTGCAGTAACTATACATGGTAGGTCACGCCAGCAACGCTATAGCAAGCTTGCTGACTGGGACTACATCTACCAGTGTGCCAGGAAGGCCCCTAATACTTTGCAAGTAGTAGGGAATGGAGATATTTTTTCATTTGTTGACTGGAACAACCACAAGGCTGAATGCTCTGAACTTGCTACATGTATGATTGCTCGTGGAGCGCTGGTTAAGCCTTGGATATTTACAGAGATCAAGGAACAAAGGCACTGGGACATAAGCTCTGGCGAGCGATTAAATATTTTGAAAGATTTTGTACATTTTGGCCTTGAACACTGGGGCTCTGACACAAAAGGAGTGGAGACAACCAGACGGTTTTTGTTAGAATGGCTTAGCTACACATGTAGATATATACCTGTTGGCCTTTTGGAAGTTATTCCACAACGACTAAACTGGCGTCCACCTTCTTACTATGGGCGCGATGACCTTGAGACCCTAATGGCCTCTGACTCTGCGGCTGACTGGATACGGATATCAGAGTTGTTGCTTGGCAAGGTTCCAGATGGCTTTTCGTTTGCACCAAAGCATAAATCAAATGCCTACGACAGAGCTGAAAATGGTTAA 2103 0.4427 MYESATKTVAVSEVSGEQPSSNSNGATEQTPEQLVARAIAPVKKEFLRPPPVRNSSTAQNDDVSEDKDKASAQSGGLVKEKKSKRQLKRERRQEQKSARNICPEVAKTGDVSSCSYNDKCRFSHDLEAFKAQKPTDLEGECPFFKAEGSCPYGLACRFSGTHTEGVPSGNLNGRRKSSEINGLSKDVQKLLWKNKMRFPKADAKLKVLGLLASSKSKRNDLEDKEGGDTDCHQADDNGSCEVTNESESKLESSAEVAKDDGVDENFESDLLCPQKRRKVEENSGVDAAENEGTCVANQNVDESSLNQNVDESCIQAEPETGTEVIPPETDQSMKLHPQEKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDIFGVQICGAFPDTVTRTIELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIVEVASSTVDKPITVKVRTAYFEGKNRIDSMIADIGSWGASAVTIHGRSRQQRYSKLADWDYIYQCARKAPNTLQVVGNGDIFSFVDWNNHKAECSELATCMIARGALVKPWIFTEIKEQRHWDISSGERLNILKDFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLEVIPQRLNWRPPSYYGRDDLETLMASDSAADWIRISELLLGKVPDGFSFAPKHKSNAYDRAENG 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0139 700 Coils Coil 77 97 - -
Dere06g0139 700 MobiDBLite consensus disorder prediction 1 101 - -
Dere06g0139 700 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 92 171 - -
Dere06g0139 700 MobiDBLite consensus disorder prediction 217 235 - -
Dere06g0139 700 MobiDBLite consensus disorder prediction 60 83 - -
Dere06g0139 700 Gene3D - 91 168 - -
Dere06g0139 700 Gene3D Aldolase class I 343 586 IPR013785 -
Dere06g0139 700 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 344 586 - -
Dere06g0139 700 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Dere06g0139 700 SMART c3hfinal6 97 126 IPR000571 GO:0046872
Dere06g0139 700 ProSiteProfiles Zinc finger C3H1-type profile. 140 165 IPR000571 GO:0046872
Dere06g0139 700 MobiDBLite consensus disorder prediction 1 31 - -
Dere06g0139 700 ProSitePatterns Uncharacterized protein family UPF0034 signature. 432 450 IPR018517 GO:0008033|GO:0017150|GO:0050660
Dere06g0139 700 MobiDBLite consensus disorder prediction 251 269 - -
Dere06g0139 700 MobiDBLite consensus disorder prediction 236 250 - -
Dere06g0139 700 CDD DUS_like_FMN 348 583 IPR035587 -
Dere06g0139 700 ProSiteProfiles Zinc finger C3H1-type profile. 96 127 IPR000571 GO:0046872
Dere06g0139 700 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 159 IPR000571 GO:0046872
Dere06g0139 700 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Dere06g0139 700 Pfam Dihydrouridine synthase (Dus) 351 585 IPR035587 -
Dere06g0139 700 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 29 694 - -
Dere06g0139 700 SUPERFAMILY FMN-linked oxidoreductases 348 661 - -
Dere06g0139 700 MobiDBLite consensus disorder prediction 217 269 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere06g0139 Dus 4.6e-51 CL0036