Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere06g0131 | ATGGAAGTTAGTCTCACTTCCAATCACTATACTCTAAGCTTAACATCACGTTCTCCTGCGACTTTCTCCCTTTACGATCTCCGATCCATCCGCACACAGTTTCTTGGTTGTTCTCACAATCTCAGGCCTCCCGGAGGTCTTCGCTCTAGAAATAATAAATGCAAGAAGTTGAGGCTTCTTCACCTCCATTCCCCTCGCTTTATCTTCAAAGCCTCTTTGAGCTCTCACTCCATCATCGTCGTTGTCACCTTAGTTACTTTATCTGTGGTTTCTCTGTTCTACTACAGTCACACGAGGAGAAAGAAGAATCCCAAAGAGATACTGGGACACCCAAAATTTGCATTATCTGAACAAGGAAGTGGTCTTGGGAACCAGGCCATGGAAAGCCAGATTCTTTGCTTTCAGGAATTCCAAGGGGAGAACTTACTGAAAGAAATTGGGATATTGGAGGATAATTCTGGAGTAGATAACCATGATTTTGAGGGCAAAGAGGCTCAGCTAACATATTTGAGATCTTCTATGGTGCAAGAAGAGGCCACCATGTCTAAGAAATTCGAGTCACATTCTGATGTTCCTACCTCTAGTGTTAACAATGCTTCATCTTCAAACAGTTCCAAGGTCATAGATGAATCTTGTTTGCCCATGGACTTCCAATCAAGTTCATTCGAACCTCTATCTTTTGCTGCAGAAATGACTGAATTACAAGTGGAAGCAACTCAAGATAAAGCTCACTCTGATTCTGAGTTGCCTATAATTATAAAGAAATCTGAGCATGCTGCTTCTTTTGATTGTGTAAATGATGCACTCACGACAGTAAAAGAGCATGCTGAAGAAAAAATTGAACTTGGTGCCATCAGCAGTGATGTCCTAACTGGTGAATTGGTTAGGCAAGAACTGTACACGTTCTATCAAGTCAACAAGTCTGCAACTGGATCCAAGTCACCACAGAGTAGTTTAAAATCATCATCTTCCCATGCATCTTTCATGAAGAAAAATAAATTACACTCCGCAATGGGGAATAATACTTTAACAGGACCAAAATCATTTAAAGAGGTTTCTTTACATATTGCAGAGAATGTTGAAGAAGTGGAACCAAGAGCCAGTTACAGAGAAGGCTACCCCCAGCAAAATGGAAGTAAATCCTTGAGGAAAGGTAGTAGATCTCTGAGAGACCAGGAAAAAACCAGTCTTGATCAGAAGAGTAACAAAGTTTTTCCCCAGATTTCCCACTCAATCAGGGAGCATGTTGATCAGAAAAATCATCATTCTCAACATCTAACCACATATAATTCTTTGCTAAAAGATGGAAGGCTACATGAATGTGTAGAATCGCTTAAAGATGTGGAAATGAAGGGGATTTTAGATATGACCAAGGTATATCATGCAAAGTTTTTTAACACCTGCAAGAGACAAAAGGCTGTTCAAGAAGCATTTGAATACACTAAGCTTATTCCAAATCCAAAATTGAGTACATTTAATATGCTTATGTCAGTGTGTTCAAGCTCTCAAGATTCGGAAGGGGCTTTCCAAGTTCTGCAGCTTGTTCAGGAGGCTGGATTTAAACCTGATTGCAAACTTTATACCACTCTGATATCAACATGTGCTAAGAGTGGTAAAGTTGATAAAATGTTTGAAGTATTTCACAACATGGTTAATTCTGGAGTCGAACCCAATCTTCATACTTACGGAGCACTAATTGATGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAAGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATTGCTGCATGTGCTCAATCAGGAGCGGTTGATCGTGCTTTTGATGTTTTAGCAGAGATGGCGGCTGAATTGCAGCCTATTGAACCAGACCACATAACTATTGGTGCATTGATGAAGGCATGCACAAATGCTGGTCAGGTTGAACGGGCACGAGAAGTGTATAAGTGGTTACATGAATATAGTATAAAAGGAACTCCAGAGGTCTACACTATTGCCATCAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCATGCAGCATATACAGCGACATGACGGGGAAAGGGGTTCTCCCTGATGAGATATTTCTGAGTGCACTAATAGATGTTGCTGGACATGCTGGAAAGCTAGATGCTGCCTTTGAAGTCCTACGTGAAGCTCGTAACCAAGGAATACGTATTGGAACTGTGACATACAGCTCTTTGATGGGAGCCTGTAGCAATGCTGGAAATTGGGAGAAAGCACTGGAGCTATATGAGGATCTTAAGTCTCGTAAATTGGTGAACACTGTTTCAACAATGAACGCTTTGATCACTGCACTGTGTGATGGAGATCAATTCCAAAAAGCTATGGAAGTTTTGTTTGAAATGAAAGGATTAGGCTTGTGCCCAAACAGTATCACATACTCAATACTTATCTTAGCAAGTGAAAAAAAGGACGATCTGGAAGCAGGTCAAATGCTCCTTTCTCAAGCCAAAATGGATGGTGTTTCCCCGGATCTTATCATGTGTAGATGCATAACTGGGATGTGCTTGCGGAGATATGAGAGGGCTTGCAATGTTGGCGAACCTGTTTTATCTTTTGACTCAGGACGACCACTTGTTAATAATAAATGGACATCACTGGCCTTAATGGTGTATCGTGAAATGATTGGAGATAGTACAATGCCTACCAGTGAAGTTCTGTCACAAATTCTTGGATGCCTGCAGATCCCATTAGATGCATCTTTAAAAAATAGACTTGTTGATAACCTGGGAGTAAGTGCTGAAGCTTCAAGAAGTTCAAACCTCTGTTCATTGATAGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCGCTACTTGAGGAAGCTGCTTCACTTGGAATTGTTCCATCTGCATCTTTTAAAGTGAATCCTAGTATTGTGGATTTAAAGGAATTGCATAATTTTACTGCTGAGGTATACCTCTTAACTGTTTTGAAAGGTCTGAAGCATCGGCTTGCAGCAGGTGCTAGATTGCCCAACATAATAATCTTATTGCCTATAGAGAAAACAAAAGTACCATCTTCCAAGGGGGAAAAACTTATTAACCTTTCAGGAAGGGTTGGCCAGGCAGTTGCAGCGCTATTGAGAAGGCTTAGGATACCTTACCAGGGTAGTGAATCATATGGGAAGATCAGAATTAATGGAATAACTTTGAGAAAATGGCTTCAGCCAAAACTTGCATCCCCTTTCAGTGGAAAACCAGGTGACTTGAGCTTATCCCAGTCACGACTGGGCAAAGGTATCAGTCATCAACAGCGAAACATTAGAACTGGCAATCTGTCTTTGGATTAA | 3339 | 0.4088 | MEVSLTSNHYTLSLTSRSPATFSLYDLRSIRTQFLGCSHNLRPPGGLRSRNNKCKKLRLLHLHSPRFIFKASLSSHSIIVVVTLVTLSVVSLFYYSHTRRKKNPKEILGHPKFALSEQGSGLGNQAMESQILCFQEFQGENLLKEIGILEDNSGVDNHDFEGKEAQLTYLRSSMVQEEATMSKKFESHSDVPTSSVNNASSSNSSKVIDESCLPMDFQSSSFEPLSFAAEMTELQVEATQDKAHSDSELPIIIKKSEHAASFDCVNDALTTVKEHAEEKIELGAISSDVLTGELVRQELYTFYQVNKSATGSKSPQSSLKSSSSHASFMKKNKLHSAMGNNTLTGPKSFKEVSLHIAENVEEVEPRASYREGYPQQNGSKSLRKGSRSLRDQEKTSLDQKSNKVFPQISHSIREHVDQKNHHSQHLTTYNSLLKDGRLHECVESLKDVEMKGILDMTKVYHAKFFNTCKRQKAVQEAFEYTKLIPNPKLSTFNMLMSVCSSSQDSEGAFQVLQLVQEAGFKPDCKLYTTLISTCAKSGKVDKMFEVFHNMVNSGVEPNLHTYGALIDGCARAGQVAKAFGAYGIMRSKKVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAELQPIEPDHITIGALMKACTNAGQVERAREVYKWLHEYSIKGTPEVYTIAINSCSQTGDWEFACSIYSDMTGKGVLPDEIFLSALIDVAGHAGKLDAAFEVLREARNQGIRIGTVTYSSLMGACSNAGNWEKALELYEDLKSRKLVNTVSTMNALITALCDGDQFQKAMEVLFEMKGLGLCPNSITYSILILASEKKDDLEAGQMLLSQAKMDGVSPDLIMCRCITGMCLRRYERACNVGEPVLSFDSGRPLVNNKWTSLALMVYREMIGDSTMPTSEVLSQILGCLQIPLDASLKNRLVDNLGVSAEASRSSNLCSLIDGFGEYDPRAFSLLEEAASLGIVPSASFKVNPSIVDLKELHNFTAEVYLLTVLKGLKHRLAAGARLPNIIILLPIEKTKVPSSKGEKLINLSGRVGQAVAALLRRLRIPYQGSESYGKIRINGITLRKWLQPKLASPFSGKPGDLSLSQSRLGKGISHQQRNIRTGNLSLD | 1112 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere06g0131 | 1112 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 700 | 734 | IPR002885 | - | |
| Dere06g0131 | 1112 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 523 | 557 | IPR002885 | - | |
| Dere06g0131 | 1112 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 593 | 623 | IPR002885 | - | |
| Dere06g0131 | 1112 | Pfam | Pentacotripeptide-repeat region of PRORP | 466 | 629 | IPR033443 | - | |
| Dere06g0131 | 1112 | Pfam | Pentacotripeptide-repeat region of PRORP | 638 | 779 | IPR033443 | - | |
| Dere06g0131 | 1112 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 665 | 699 | IPR002885 | - | |
| Dere06g0131 | 1112 | NCBIfam | pentatricopeptide repeat | 737 | 768 | IPR002885 | - | |
| Dere06g0131 | 1112 | NCBIfam | pentatricopeptide repeat | 668 | 701 | IPR002885 | - | |
| Dere06g0131 | 1112 | NCBIfam | pentatricopeptide repeat | 491 | 524 | IPR002885 | - | |
| Dere06g0131 | 1112 | NCBIfam | pentatricopeptide repeat | 526 | 558 | IPR002885 | - | |
| Dere06g0131 | 1112 | NCBIfam | pentatricopeptide repeat | 773 | 805 | IPR002885 | - | |
| Dere06g0131 | 1112 | NCBIfam | pentatricopeptide repeat | 560 | 593 | IPR002885 | - | |
| Dere06g0131 | 1112 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC | 13 | 1111 | - | - | |
| Dere06g0131 | 1112 | MobiDBLite | consensus disorder prediction | 384 | 398 | - | - | |
| Dere06g0131 | 1112 | Gene3D | Tetratricopeptide repeat domain | 426 | 624 | IPR011990 | GO:0005515 | |
| Dere06g0131 | 1112 | Gene3D | Tetratricopeptide repeat domain | 625 | 735 | IPR011990 | GO:0005515 | |
| Dere06g0131 | 1112 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic | 437 | 568 | - | - | |
| Dere06g0131 | 1112 | MobiDBLite | consensus disorder prediction | 181 | 203 | - | - | |
| Dere06g0131 | 1112 | MobiDBLite | consensus disorder prediction | 1090 | 1112 | - | - | |
| Dere06g0131 | 1112 | FunFam | Pentatricopeptide repeat-containing protein MRL1 chloroplastic | 715 | 862 | - | - | |
| Dere06g0131 | 1112 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 | 623 | 714 | - | - | |
| Dere06g0131 | 1112 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 735 | 769 | IPR002885 | - | |
| Dere06g0131 | 1112 | MobiDBLite | consensus disorder prediction | 363 | 405 | - | - | |
| Dere06g0131 | 1112 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 488 | 522 | IPR002885 | - | |
| Dere06g0131 | 1112 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 770 | 804 | IPR002885 | - | |
| Dere06g0131 | 1112 | Gene3D | Tetratricopeptide repeat domain | 736 | 861 | IPR011990 | GO:0005515 | |
| Dere06g0131 | 1112 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 558 | 592 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere06g0131 | 508 | 852 | Glycosyltransferase | AT1G05670 | 24.138 | 8.43e-29 | 122 |