Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0104 ATGGGTGAGAGGATCAGTGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGGTTTGGCTTCATAACCCCTGACGATGGCGGTGAGGATCTTTTTGTGCATCAGTCTTCGATCCGATCCGAGGGGTTTCGCAGTCTCGGCGATGGGGAGTCCGTGGAGTTTGTTATCGACTCTGATTCCGACGGCCGATCCAAAGCTGTTGATGTGACGGGACCCGAAGGGTCGCCCGTTCAGGGGAGCCGTCGCGGCGGTGGTGGCGGTGGCGGGGCCGGAGGTGGTGGATATGGTGGTGGAGGGAATAGGGGCTACGGGGGTGGACGCGGAGGTGGTGGGTATGGTGGAGGCGGCGGTCGTGGCGGAAGAGGAGGCGGTGGGGGCGGCTATGGCTTCGGAGGCGGGGCTTGTTATAAGTGTGGCGAGTCTGGTCACATAGCAAGGGACTGCTTCCAGGGAGGCGGAGGCGGTGGAGGAAGGTATGGAGGAGGTGGTTACGGCGGCGGCGGCGGCGGCGGAGGCGGGAGCTGCTACAACTGTGGGGAGGCAGGGCATTTCGCTAGGGATTGCCCTACCAACGGTCGTTGA 579 0.6287 MGERISGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSEGFRSLGDGESVEFVIDSDSDGRSKAVDVTGPEGSPVQGSRRGGGGGGGAGGGGYGGGGNRGYGGGRGGGGYGGGGGRGGRGGGGGGYGFGGGACYKCGESGHIARDCFQGGGGGGGRYGGGGYGGGGGGGGGSCYNCGEAGHFARDCPTNGR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0104 192 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Dere06g0104 192 SMART csp_8 6 71 IPR011129 GO:0003676
Dere06g0104 192 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Dere06g0104 192 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Dere06g0104 192 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Dere06g0104 192 ProSiteProfiles Zinc finger CCHC-type profile. 134 147 IPR001878 GO:0003676|GO:0008270
Dere06g0104 192 SMART c2hcfinal6 173 189 IPR001878 GO:0003676|GO:0008270
Dere06g0104 192 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Dere06g0104 192 PANTHER COLD SHOCK DOMAIN PROTEIN 2 103 189 - -
Dere06g0104 192 MobiDBLite consensus disorder prediction 56 98 - -
Dere06g0104 192 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Dere06g0104 192 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Dere06g0104 192 Gene3D - 2 82 IPR012340 -
Dere06g0104 192 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Dere06g0104 192 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Dere06g0104 192 ProSiteProfiles Zinc finger CCHC-type profile. 174 188 IPR001878 GO:0003676|GO:0008270
Dere06g0104 192 SUPERFAMILY Retrovirus zinc finger-like domains 126 190 IPR036875 GO:0003676|GO:0008270
Dere06g0104 192 Pfam Zinc knuckle 173 188 IPR001878 GO:0003676|GO:0008270
Dere06g0104 192 Pfam Zinc knuckle 133 149 IPR001878 GO:0003676|GO:0008270
Dere06g0104 192 Gene3D - 129 156 - -
Dere06g0104 192 Gene3D - 169 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0104 Dere-ChrDere06 1174278 1174856 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Dere06g0104 CSD 1.1e-25 CL0021