LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere06g0098	ATGCGTAGGGGGATCTCGCTTCTCGTTCAGCCGCGATGCCTCCTTTTATTTCTTGTTCTCTTAATTTTCCTCATTTTCGCTCTCTCTGGCTCCAAACGGGTTGAGGACAAAGCAGAAGAGGAGCCTGAAATTACACATAGAGTATTCTTGGAAGTCGACATTGATAAACAACGTTTTGGTAGGATCGTGATTGGATTATATGGCCAAGATGTTCCAAAAACTGTGGAAAATTTTAGAGCTTTGTGTACAGGGGAGAAAGGCAAGAATGCTAGTGGCATAAAACTTCATTATAGAGGAACACCATTCCACCGCATAATATCTGGTTTCATGATTCAGGGTGGTGACATTGCTCATCATGATGGCAGTGGATATGAATCTATTTATGGTGGCACCTTTCCTGATGAGAACTTCAAGATAAAACATTCACATGCTGGAGTTGTATCTATGGTGAATTCAGGACCTGATTCCAATGGCTCGCAGTTTTTTATCACAACAGTGAAGGCTAGCTGGTTGGATGGAGACCATGTTGTGTTTGGCAAGGTAATTGAAGGCATGGATACCGTGTTTGCAGTAGAAGGGGGAGCTGGAACCTACAATGGGAAACCCAGAAAGAAGGTAGTGATTGCAGACTCCGGTGAGATACCCAAGAGCCAGTGGGATGATCAAAGATGA	672	0.436	MRRGISLLVQPRCLLLFLVLLIFLIFALSGSKRVEDKAEEEPEITHRVFLEVDIDKQRFGRIVIGLYGQDVPKTVENFRALCTGEKGKNASGIKLHYRGTPFHRIISGFMIQGGDIAHHDGSGYESIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGDHVVFGKVIEGMDTVFAVEGGAGTYNGKPRKKVVIADSGEIPKSQWDDQR	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere06g0098	223	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	47	214	-	-
	Dere06g0098	223	FunFam	Peptidyl-prolyl cis-trans isomerase	34	220	-	-
	Dere06g0098	223	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	53	211	IPR002130	GO:0000413\|GO:0003755
	Dere06g0098	223	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	97	114	IPR020892	GO:0003755\|GO:0006457
	Dere06g0098	223	SUPERFAMILY	Cyclophilin-like	43	214	IPR029000	-
	Dere06g0098	223	Gene3D	-	33	220	IPR029000	-
	Dere06g0098	223	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	102	114	IPR002130	GO:0000413\|GO:0003755
	Dere06g0098	223	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	173	188	IPR002130	GO:0000413\|GO:0003755
	Dere06g0098	223	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	160	172	IPR002130	GO:0000413\|GO:0003755
	Dere06g0098	223	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	145	160	IPR002130	GO:0000413\|GO:0003755
	Dere06g0098	223	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	66	81	IPR002130	GO:0000413\|GO:0003755
	Dere06g0098	223	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	49	213	IPR002130	GO:0000413\|GO:0003755

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere06g0098	Dere-ChrDere06	1091559	1095263	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere06g0098	60	211	U-box Gene Family	AT5G67530	42.484	6.35e-26	103

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere06g0098	06	1091559	1095263	Dere06g0098	06	1091559	1095263	ECH