Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0090 ATGGGTTTCTTCAGTACTATATTTGGGGTTTGTGGATTCGGAATTGGGATTTCTGTTGGTCTTGCTATTGGGTATTTTCTCTTCATATACATTCAACCCAGCGATGTAAAGGATCCTGTAATTTGTCCATTGGCAGAGCAAGACGAAGAGGCTTTGCAAAGAATGATTCCTGAGATTCCAATATGGATAAAAAATCCAGACTTTGATCGGATTGACTGGCTAAACAAGTTTCTTGGATATATGTGGCCTTACCTTGACAAGGCTATTTGCAAGACTGTAAAGGGCATTGTAACACCCATAATAGATGAGCAGATAAAAAATTATAAGATTGAGTCTGTTGAGTTTGAAAAGTTAACACTGGGGACCCTGCCACCAACTTTTCAAGGGATGAAAGTCTATGTGACTGATGAGAAGGAGCTGATGATGGAGCCTAGTATAAAATGGGCTGGAAATCCTAATATTATGGTTGCTGTTAAGGCGTTTGGGTTGAAAGCAACCGCTCAGGTGGTGGATTTGCAAGTTTTTCTTTGGCCACGTATTACTTTGAAGCCTTTAGTTCCAACATTTCCTTGCTTTTGCAACATTTTTGTGTCTCTCATGGAGAAGCCACATGTTGACTTTGGGCTAAAACTTGTAGGGCTTGATCTCATGTCTATTCCTGGCCTCTACAGGTTTGTTCAGGAGATCATCAAAGATCAGGTTGCAAATTTGTACTTATGGCCAAAAACCCTAGAAGTTCCAGTTCTAGATCCAATAAAAGCCTTGAAGAGGCCAGTTGGAGTTCTCACCGTAAAGGTTCTTAGAGCCATAAAGCTAAAGAAGAAAGATCTTATTGGTGCGTCTGACCCTTATGTAAAACTAAAGCTTTCTGATGAAGCGATGCCATCAAAAAAGACTACAGTGAAGCACAAAAACTTGAATCCTGAATGGAATGAGGAATTTAATATGCTTGTTAAAGATCCTGAGAACCAGGTTCTAAGGCTTAAAGTTTTTGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTATAAATATAATCCGTCTAACCGAAGTTTCCCCTGATGAGCCTAAAGTTTTTACTCTTGATCTCTTGAAAAACATGGATCCTGACGATTGCCAAAACGATAAGCCACGTGGTCAGATTGTTGTAGAACTAACATATAAACCATTCAAAGATGAGGACTTACTCAACAGTAAAGAGGCACAAATTTTACAGAAGGCTCCTGAAGGTACTCCTCCTGGTGGAGGTCTGCTTGTGGTTATAGTCCATGAAGCTCAAGATGTTGAAGGGAAGTACCACACTAACCCACAAGCACGTGTTCTTTTCAAAGGAGAGCAGAAAAGGACTAAGCACATAAAAAAGAATAGAGATCCAAGATGGGAAGAGGAGTTCCAATTTATAGCAGAGGAACCTCCCACTAATGAGAAAATGCAGGTGGAGGTTGTCAGCACCTCATCGCGCAACCTGCTGCATCCAAAGGAATATCTGGGCTATGTCGAGATCAGTCTTGCGGATGTTGTGGCTAACAAGAGAATTAATGAAAAGTACCGTCTTATAGACTCAAAGAATGGTCGAATCCAGATAGAGTTGCAGTGGCTAAACAAGTTTGTCGTTGCTCATATCAGGGAACTGCTCAAGCTTCCAACAGACAAGCCCTTGCTGGAGGATCCTGGATTTCCTGGTTATGTTGAGCTGTAG 1701 0.4139 MGFFSTIFGVCGFGIGISVGLAIGYFLFIYIQPSDVKDPVICPLAEQDEEALQRMIPEIPIWIKNPDFDRIDWLNKFLGYMWPYLDKAICKTVKGIVTPIIDEQIKNYKIESVEFEKLTLGTLPPTFQGMKVYVTDEKELMMEPSIKWAGNPNIMVAVKAFGLKATAQVVDLQVFLWPRITLKPLVPTFPCFCNIFVSLMEKPHVDFGLKLVGLDLMSIPGLYRFVQEIIKDQVANLYLWPKTLEVPVLDPIKALKRPVGVLTVKVLRAIKLKKKDLIGASDPYVKLKLSDEAMPSKKTTVKHKNLNPEWNEEFNMLVKDPENQVLRLKVFDWEQVGKHDKMGINIIRLTEVSPDEPKVFTLDLLKNMDPDDCQNDKPRGQIVVELTYKPFKDEDLLNSKEAQILQKAPEGTPPGGGLLVVIVHEAQDVEGKYHTNPQARVLFKGEQKRTKHIKKNRDPRWEEEFQFIAEEPPTNEKMQVEVVSTSSRNLLHPKEYLGYVEISLADVVANKRINEKYRLIDSKNGRIQIELQWLNKFVVAHIRELLKLPTDKPLLEDPGFPGYVEL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0090 566 PRINTS C2 domain signature 277 289 IPR000008 -
Dere06g0090 566 PRINTS C2 domain signature 326 334 IPR000008 -
Dere06g0090 566 PRINTS C2 domain signature 304 317 IPR000008 -
Dere06g0090 566 FunFam Synaptotagmin-2 isoform A 255 409 - -
Dere06g0090 566 FunFam Extended synaptotagmin-2 418 535 - -
Dere06g0090 566 Pfam C2 domain 260 358 IPR000008 -
Dere06g0090 566 Pfam C2 domain 418 519 IPR000008 -
Dere06g0090 566 CDD C2 262 364 - -
Dere06g0090 566 CDD SMP_SYT 60 248 - -
Dere06g0090 566 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 393 IPR035892 -
Dere06g0090 566 SMART C2_3c 418 516 IPR000008 -
Dere06g0090 566 SMART C2_3c 261 361 IPR000008 -
Dere06g0090 566 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Dere06g0090 566 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Dere06g0090 566 Gene3D C2 domain 418 538 IPR035892 -
Dere06g0090 566 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 417 541 IPR035892 -
Dere06g0090 566 Gene3D C2 domain 256 410 IPR035892 -
Dere06g0090 566 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 533 IPR045050 GO:0008289
Dere06g0090 566 ProSiteProfiles C2 domain profile. 400 517 IPR000008 -
Dere06g0090 566 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0090 Dere-ChrDere06 1023718 1034571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0090 255 542 Lipid Metabolism Gene Families AT3G61300 27.213 1.23e-14 75.5