Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0088 ATGCATTCTCTCACATCCATGTGGACAAGCATGACGATTTCTGGGAATCGCCTGCTTCTGCAGGTTGTACTCCTTTCCATCATCGTTTCTTACACCGTTGCTCATGAACTGCACAGGAACGTCACTTACGACGGAAGATCTCTAATCATCAACGGAAAACGGGAGCTTCTTTTCTCTGGTTCCATCCATTACCCTCGCAGTCCCCCCGAGTCGTGGCTAGACCTTCTTAATAAGGCAAGACACGGAGGTTTGAACGTGATTCAGACTTATGTGTTCTGGAACGTTCATGAGCCGGAGAAAGGCAAGCTGAACTTTGAAGGGAACTATGATGTGGTGAAGTTTCTTAAGCTTGTTCAACAGAAAGGAATGTACGCAACCCTCAGGGTTGGACCTTTCATCCAGGCAGAATGGAATCATGGAGGACTTCCATATTGGCTAAGAGAGGTACCAGACATCATATTCCGCTCTGACAATGCACCCTTCAAGTTCTACATGGAAAGATTCGTGTCAGCGGTGATAGATGAAATGAAAGCTAAGAAGATGTTTGTTTCCCAAGGAGGCCCCATCATCTTGGCACAGATTGAGAATGAATACAACCATGTCCAACTTGCTTATAGAGCGAAGGGAGATAGCTATGTTCAGTGGGCTGCAAATATGGCGTTGTCAAAGTATGCCGAAGTTCCATGGGTCATGTGCAAGCAAAAGGATGCTCCTGATCCAGTGATCAATGCATGCAATGGAAGGCACTGCGGTGATACTTTCACTGGCCCTAACAAACCATACAAGCCTTCCATATGGACTGAAAACTGGACTGCCCAATACAGAGTATTCGGAGATCCACCATCCCAGAGATCTGCTGAAGATATTGCCTTCTCAGTTGCTCGCTTCTTCTCTAAGAATGGAGCTTTGGTCAACTACTACATGTACCATGGTGGAACAAACTTCGGTAGAACTAGCTCTGCTTTCTCTGCAACCCGTTATTACGATGAAGCTCCTCTTGATGAATACGGTTTGGAAAGAGAACCAAAATGGGGACACCTCAGGGATGTTCACAGGGCTTTGAGCCTTAGCAAGAGGGCTCTGCTCGCGGGTACACCTAGTGTCACCAAGCTGAACGATTACCTTGAGATTACGGTCTATGAGAAGCCAGAAAGTGGTTTATGTGCTGCTTTCTTAACTAACAACCACTCACAGATAGAAGCAACCATAAACTTCAGAGGCAAGAGCTACTTTTTGCTGCCACATTCCATCAGTATCCTCCCTGATTGCAAGACTCTGGTCTACAACACTCAAACAATTGCCTCGCAACATAATTCAAGAAACTTTAGGAGATCACAGATTGCAAACAGCAATAAGTGGGAGGTGTTCTCAGAAACCATTCCAACTACCCGGGAAGTGCCAGTCAATTCTTCTGCTCCCCTGGAACTTTACTCTTTACTTAAGGACACCACTGACTATGCATGGTACACCACTAGCATCGAGTTGAGTCCAGAAGACATGCCAATGAAGCCTGGAGTCTCCCCTGTTCTTCGTATCGCCAGTCTTGGCCATTCGCTGGTTGCATTTGTAAATGGAGAATACCTTGGTACCGCTCATGGTAGCCATGAGGAAAAATTTTTCCAATTCCAAAAGAGTGCAAATTTCAAGGTTGGGGTCAACCACATATCTATTTTGGCTAGTATAGTTGGACTCCCAGATAGTGGTGCATACATGGAGCACAGGTATGCAGGTCCCAAGTCTATAACCATCCTCGGTCTGAACACAGGAACTATTGATCTGACGGTCAACGGATGGGGTCATCAGGTTGCTCTCACAAGCGAAAAACTTGGCGTTTTTACCGAGGACGGATCGAAGAAGGTACAATGGAAACCGGTCAATGGCCTTCAACCAGCTCTCTCGTGGTACAAGAGAACTTTCGATGCCCCCGAAGGAAGAGGTCCTGTTGCCATTCGAATGAATGGCATGGGGAAGGGAATGATTTGGATCAATGGTAAAAGCATTGGTCGTCACTGGATGAGCTACCTCTCTCCTCTAGGAGAGCCTACCCAGTCAGAGTACCACATCCCAAGAGCTTGGCTGAAAGAAAAGGACAATTTGGTAGTTGTATTGGAGGAGGCACCTGCAACACCCGAAGAGATCGAGATCTTAAACGTAGATAGAGATACAATCTGCAGTTTCATCACAGAGCGTCATCCACCCCATGTCAAATCTTGGGAGAGCAAGAAAAGGCAATTCCAAATCTCTGGGGAAAAGGCGGTGCCAGGAGCTGTCCTCAGATGCCCGTACCACAAAAGGATAGTAGCTATAGAATTCGCGAGCTTCGGAAACCCCACGGGTTTTTGCGGCGGGTACGAAATGGGAAATTGCAGTGTGCCTGTGACGAAGCAGATTGTGGAGCAACGATGCTTGGGAAAGCATAGCTGTTCGGTTCCAATGGATCCTGCGGTTTTCTCGAAGAACGGCGATGCTTGCCCTGGTGTGATGAAGACTCTTGCTATCCAAGCAAGATGTTCCTATTTAAAAAAGTAG 2529 0.4682 MHSLTSMWTSMTISGNRLLLQVVLLSIIVSYTVAHELHRNVTYDGRSLIINGKRELLFSGSIHYPRSPPESWLDLLNKARHGGLNVIQTYVFWNVHEPEKGKLNFEGNYDVVKFLKLVQQKGMYATLRVGPFIQAEWNHGGLPYWLREVPDIIFRSDNAPFKFYMERFVSAVIDEMKAKKMFVSQGGPIILAQIENEYNHVQLAYRAKGDSYVQWAANMALSKYAEVPWVMCKQKDAPDPVINACNGRHCGDTFTGPNKPYKPSIWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGALVNYYMYHGGTNFGRTSSAFSATRYYDEAPLDEYGLEREPKWGHLRDVHRALSLSKRALLAGTPSVTKLNDYLEITVYEKPESGLCAAFLTNNHSQIEATINFRGKSYFLLPHSISILPDCKTLVYNTQTIASQHNSRNFRRSQIANSNKWEVFSETIPTTREVPVNSSAPLELYSLLKDTTDYAWYTTSIELSPEDMPMKPGVSPVLRIASLGHSLVAFVNGEYLGTAHGSHEEKFFQFQKSANFKVGVNHISILASIVGLPDSGAYMEHRYAGPKSITILGLNTGTIDLTVNGWGHQVALTSEKLGVFTEDGSKKVQWKPVNGLQPALSWYKRTFDAPEGRGPVAIRMNGMGKGMIWINGKSIGRHWMSYLSPLGEPTQSEYHIPRAWLKEKDNLVVVLEEAPATPEEIEILNVDRDTICSFITERHPPHVKSWESKKRQFQISGEKAVPGAVLRCPYHKRIVAIEFASFGNPTGFCGGYEMGNCSVPVTKQIVEQRCLGKHSCSVPMDPAVFSKNGDACPGVMKTLAIQARCSYLKK 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0088 842 Pfam Galactose binding lectin domain 758 837 IPR000922 GO:0030246
Dere06g0088 842 SUPERFAMILY (Trans)glycosidases 37 356 IPR017853 -
Dere06g0088 842 Gene3D Glycosidases 36 358 - -
Dere06g0088 842 Gene3D - 742 841 IPR043159 -
Dere06g0088 842 SUPERFAMILY Galactose-binding domain-like 595 744 IPR008979 -
Dere06g0088 842 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 186 198 IPR019801 GO:0004553|GO:0005975
Dere06g0088 842 PRINTS Glycosyl hydrolase family 35 signature 72 90 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 PRINTS Glycosyl hydrolase family 35 signature 630 644 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 PRINTS Glycosyl hydrolase family 35 signature 265 280 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 PRINTS Glycosyl hydrolase family 35 signature 51 68 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 PRINTS Glycosyl hydrolase family 35 signature 657 673 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 PRINTS Glycosyl hydrolase family 35 signature 184 199 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 PRINTS Glycosyl hydrolase family 35 signature 127 146 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 PRINTS Glycosyl hydrolase family 35 signature 302 317 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 PRINTS Glycosyl hydrolase family 35 signature 321 337 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 FunFam Beta-galactosidase 600 724 - -
Dere06g0088 842 Gene3D - 435 567 - -
Dere06g0088 842 PANTHER BETA-GALACTOSIDASE RELATED 32 755 IPR001944 GO:0004553|GO:0005975
Dere06g0088 842 Pfam Glycosyl hydrolases family 35 47 353 IPR031330 -
Dere06g0088 842 ProSiteProfiles SUEL-type lectin domain profile. 754 838 IPR000922 GO:0030246
Dere06g0088 842 SUPERFAMILY Galactose-binding domain-like 417 578 IPR008979 -
Dere06g0088 842 CDD Gal_Rha_Lectin_BGal 756 837 - -
Dere06g0088 842 Pfam Beta-sandwich domain in beta galactosidase 361 433 IPR041392 -
Dere06g0088 842 Gene3D - 600 725 - -
Dere06g0088 842 FunFam Beta-galactosidase 37 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0088 Dere-ChrDere06 976461 982287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0088 38 842 Glycoside Hydrolase AT4G35010 58.344 0.0 1030