LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere06g0084	ATGACTATTGAGAGAAGGGATGTGTTGGTGGGGATTAAAATCGATAGCCATAGCAGGCAGCTTCTAAACTGGGCTCTTGTCAAAGTTGCTGGACCTGGGGATTGCGTTATTGCTGTTCATGTTGTTAAATGTTCAGGTCATGTTTCAAAAAACAAGCCCCTGCTAGATAGTTATTTAGAGGTTTATGAAGGCCTATGTAATGTGAAAAAGGTAGGTCTCATAGGTCAAATATTCACAGGAAGCTCCATTGGAAAAGTTCTTGTGAGAGAGTCAAAGAACCACTCTGCTCTGGCTCTAGTGGTTGGGGGTCGAGCTTCCACAGCTAAATATTGTGCCAAACGACTCTTACCCACTACAGATGTTATAGCCATCCATGATGGAAGAATTGTCTTCAGAAGGTGTACCAATATTCAACTACCAGGTCTTATACAAGATCCAAGGCCTAGTCTCGCAAGCAAAGACGGCAAAGAATTCCTTATTGAATTTGGTGACTCCGGGGTTACCACTGTGAAATCAGTATGCGAGGAGTCAAGAGAGGATGTCCCAGAATTGAAAGAAGTATTTGACAGAAAAGAGAGCGAGAAAGTGTCTTCAAGATCAGTATCTCTGTTTGCAGGTGACCCTTGTGAACCGAAGCTGGGATGGCCCTTGCTCCGAAGAGCTAATTCAGGAATCTCAGATACTCCTCTTGCGAGGGACATATCTGTAGTACAGTGGGTAATGAACTTACCAGATCGCTCGCCAAAGAAAAGTTCTTGCTTTTCATCCATTAAGGAAACTCTCTCAGAAAGAGGCATCAGTGACATTGAGAATGAGAGACAGAAAAACAGTTCAACTTCTTCATCTGTTGAGCTACCAAAGGGATTGGAGGGGATCTTGGGCATGACTTCATTTGATTGCAAGTGGTTCAACCTTGAGGATCTCAAGTCCTGGACTTCTCAATTCTCTTCAGGAAATCTGATTGGGAAAGGAGGGAGTAACCGTGTATACAAAGGGATTCTTCCTGATGGAAAACCAATTGCAGTCAAAGTTTTACAATCATCAAAAGAAGCTTGGAAAGATTTTGCACAGGAAGTGGAAATAATATCCTCTTTGATGCACAAAAGCATCACTCCTTTGCTTGGAATTTGCATTGAAGAAAATGCTCTAATCTCTGTTTATGAGTTTTTCCCCAACGGGAGCTTAGAGGAAAATCTACATGGTAAAAACAAGGATCGGTCCATATTGTCATGGGAAGTGAGATTTAATGTAGCTGTTAGAATAGCAGAAGCCCTCAATTACCTACACAACGAAGCTTCGAAGCCTGTTATACATAGAGATGTCAAGTCTTCAAATATTCTTCTCTCCCATGAGTTTCAACCACAATTGACTGATCTTGGACTTGCAATCTGGGGACCAACAAGTTCATATTTTCTGACACAAGAAGATGTAGTAGGAACATTTGGATATCTTGCTCCTGAATACTTCATGTATGGAAAAGTAAGTGACAAGATCGATGTGTATGCCTTTGGTGTAGTTCTGCTTGAACTAATTTCAGGAAGGAAACCGATCAGCTCTGAGACTTGCAAAGGACAGGAAAGTTTGGTCGTGTGGGCAAAACCAGTAATGGAGAGTGGGGATATTAAAGGCTTATTGGACTCCAATTTAGAAGGGAAGTTTGATGAGGACCAAATGCAGAGAATGGTTAAGGCAGCAAGCCTCTGCATTACACGGGCTGCTCGGCTTCGTCCTAAGATGAACCAGATACTGAAGATCCTAAAGGGAGAAGAAAGAGATGAGAGTTTGTTAAGCTCCCAAGGGAACGATAATGAGGCTTCAGAAAACCAGGAAAACATAGATGATGAAGTGTATCCAAATTCAAGCGCAGAGTTACACCTAAGTCTTGCTTTACTTGATGTTGATGATGACAGTACATCAAATAGGAGCAGCACAGAGCGGAGCAACTGTCTTTCTTTGGAAGAACACTTAAAAGGAAGATGGAGCAGATCATCCAGTTTTGATTAG	2004	0.4202	MTIERRDVLVGIKIDSHSRQLLNWALVKVAGPGDCVIAVHVVKCSGHVSKNKPLLDSYLEVYEGLCNVKKVGLIGQIFTGSSIGKVLVRESKNHSALALVVGGRASTAKYCAKRLLPTTDVIAIHDGRIVFRRCTNIQLPGLIQDPRPSLASKDGKEFLIEFGDSGVTTVKSVCEESREDVPELKEVFDRKESEKVSSRSVSLFAGDPCEPKLGWPLLRRANSGISDTPLARDISVVQWVMNLPDRSPKKSSCFSSIKETLSERGISDIENERQKNSSTSSSVELPKGLEGILGMTSFDCKWFNLEDLKSWTSQFSSGNLIGKGGSNRVYKGILPDGKPIAVKVLQSSKEAWKDFAQEVEIISSLMHKSITPLLGICIEENALISVYEFFPNGSLEENLHGKNKDRSILSWEVRFNVAVRIAEALNYLHNEASKPVIHRDVKSSNILLSHEFQPQLTDLGLAIWGPTSSYFLTQEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGRKPISSETCKGQESLVVWAKPVMESGDIKGLLDSNLEGKFDEDQMQRMVKAASLCITRAARLRPKMNQILKILKGEERDESLLSSQGNDNEASENQENIDDEVYPNSSAELHLSLALLDVDDDSTSNRSSTERSNCLSLEEHLKGRWSRSSSFD	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere06g0084	667	ProSiteProfiles	Protein kinase domain profile.	315	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere06g0084	667	FunFam	Putative receptor-like serine/threonine-protein kinase	390	602	-	-
	Dere06g0084	667	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	436	448	IPR008271	GO:0004672\|GO:0006468
	Dere06g0084	667	Gene3D	Phosphorylase Kinase; domain 1	285	389	-	-
	Dere06g0084	667	SMART	serkin_6	315	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere06g0084	667	Gene3D	Transferase(Phosphotransferase) domain 1	390	602	-	-
	Dere06g0084	667	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	284	389	-	-
	Dere06g0084	667	SUPERFAMILY	Protein kinase-like (PK-like)	297	586	IPR011009	-
	Dere06g0084	667	MobiDBLite	consensus disorder prediction	265	284	-	-
	Dere06g0084	667	PANTHER	OS08G0249100 PROTEIN	195	614	IPR046958	-
	Dere06g0084	667	CDD	USP_Like	8	124	-	-
	Dere06g0084	667	Pfam	Protein kinase domain	317	584	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere06g0084	Dere-ChrDere06	946746	950865	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere06g0084	303	589	Trihelix Transcription Factor Family	AT1G70460	43.493	8.85e-74	250

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Dere06g0084		Pkinase	6.7e-41	CL0016