Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0069 ATGAACATCATCACGCAAAACTTGTCTGAGAGGCTGAGGCCTCTTGTGGGTTTGAATGGCTGGGACTACTGTATACACTGGAAATTAACCCAAGATCAAAGGTTTCTTGAATGGATGGGATGCTCTTGTGCTGGGACTGAAAGTAGCCAAGATGGCGGAGAAGAACTTCTCTTCCCTGTTTCTTCAGCTGCTTCATGCAGAGACACCATGTTTCCTCATCCCAGAACAAAGCCTTGTGCTTTACTTTCCCAACTTCCCACTTCCATTTCATTAGATTCTGGGATTTATACGGAGACACTATTATCAAACCAACCCAATTGGGTGAACTATTCCAATAACGTGGATTCAAATACTTTGGAAGAAACAATTGGGACCCAAGTTTTAATTCCGGTGCCAGGTGGACTCGTTGAGCTGTTTGTGACAAAGCAAGTGCCTGAAGATCATCAGGTGATCGATTTCATCACAGCCCAGTGCAATATGGACATGAGCTTCAACATTGACGTGAATTCAATCAGTCATATGCAATCAAATATTAATCCACTTTTAGGTGATGAGAAAGACGGGAATACAATAGCATCAGAGACTTCAAGTCTTCCTCCACATGATCAATGCAATTCTCCATTGAACTTCATGCAGCAATTCAACTACAGCAACCCACTGAACAGAATGAAAAGTGACGCCTTTTTCGAAGATTCCCAATGTTCCTTCCTATTAGACAAAACCCAGCAATTTGGGGAGCCTCTGGAGAAGAAGGAGCAGCAAGGGGACGATAAGGATTTAATCAAGCACGTGGTGGGCAGGTCTGATTCGATGTCAGATTGCAGCGATCAGAACGAAGATGAGGATGATGGGAAGTATAGGCGAAGGAATGGGAAGGGGAATCAATCGAAGAACCTTCTAGCAGAGAGGAGGAGGAGGAAGAAGCTCAATGACAGCTTGTACAATCTTCGGTCATTGGTTCCCAAAATTTCTAAGCTAGACAGGGCGTCGATTCTTGGGGACGCAATTGAGTTCGTGAAAGATTTGCAGAAGCAAGCCAAAGAGCTGCAAGATGAGCTCGAGGAATATTCAGATATGGGTGTACAACAACAATTAGACAATGTAAATGGAATTGAAGTTGGACCAAAATCTGAACAACTTAATACCCAAAATGAGTTTCATGTGGGTACATCAGGGAATGGCTATACAATGAATCAAAAACATGAATTGGATGCTCCTAATGACAAGCAGACACAACAAATGGAGCCACAAGTGGAAGTGGCAGTGATAGAAGGCAATGAATTGTTCGTGAAGGTGTTCTGTGAGCACCGACCTGGCGGGTTTGTGAAACTGATGGAGGCATTCAACACTCTGCGCATGGAAGTCATACATGCTACGGTCACCAGCCACAAAGGCCTTGTCTCAAATGTTTTCAAAGTCGAAAAAAAAGAGAACGAAATGGTTAAAGCTGAAGATGTAAGGGAGTCATTGCTGGAGCTCATCAGAAACCCATGCCGAGGGTGGAATCATGAGATGAATACAACAAGTAGTACAGCTTCAGAAACTGGAGTGGGAAGAGACTATCATCAACAGCATCACCACCTTCACAATCACCAGATGGGTGCTTATCACCCTCACCATTTGCACCACATTCATACTTAA 1641 0.4369 MNIITQNLSERLRPLVGLNGWDYCIHWKLTQDQRFLEWMGCSCAGTESSQDGGEELLFPVSSAASCRDTMFPHPRTKPCALLSQLPTSISLDSGIYTETLLSNQPNWVNYSNNVDSNTLEETIGTQVLIPVPGGLVELFVTKQVPEDHQVIDFITAQCNMDMSFNIDVNSISHMQSNINPLLGDEKDGNTIASETSSLPPHDQCNSPLNFMQQFNYSNPLNRMKSDAFFEDSQCSFLLDKTQQFGEPLEKKEQQGDDKDLIKHVVGRSDSMSDCSDQNEDEDDGKYRRRNGKGNQSKNLLAERRRRKKLNDSLYNLRSLVPKISKLDRASILGDAIEFVKDLQKQAKELQDELEEYSDMGVQQQLDNVNGIEVGPKSEQLNTQNEFHVGTSGNGYTMNQKHELDAPNDKQTQQMEPQVEVAVIEGNELFVKVFCEHRPGGFVKLMEAFNTLRMEVIHATVTSHKGLVSNVFKVEKKENEMVKAEDVRESLLELIRNPCRGWNHEMNTTSSTASETGVGRDYHQQHHHLHNHQMGAYHPHHLHHIHT 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0069 546 CDD bHLH_AtAMS_like 296 360 - -
Dere06g0069 546 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 142 493 - -
Dere06g0069 546 CDD ACT_UUR-ACR-like 430 494 - -
Dere06g0069 546 Pfam Helix-loop-helix DNA-binding domain 300 343 IPR011598 GO:0046983
Dere06g0069 546 Gene3D - 282 358 IPR036638 GO:0046983
Dere06g0069 546 SMART finulus 299 348 IPR011598 GO:0046983
Dere06g0069 546 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 155 IPR025610 -
Dere06g0069 546 MobiDBLite consensus disorder prediction 265 301 - -
Dere06g0069 546 Coils Coil 473 493 - -
Dere06g0069 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Dere06g0069 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 357 IPR036638 GO:0046983
Dere06g0069 546 Coils Coil 332 359 - -
Dere06g0069 546 MobiDBLite consensus disorder prediction 179 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0069 Dere-ChrDere06 791046 793244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0069 6 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.388 3.76e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere06g0069 bHLH-MYC_N 2.4e-20 CL0161