Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0050 ATGTCTAAGGTCCTGCCTCTACAACTTAACAAAGAAAAGATAGTGGGAAGTGAGACGGAGTACACGGGTCGTGATGTGCTGTTTGTCCAACTTCTTCCCTTTCTAACTTTTCAAAGGAGAAAAACGAAAAGAAAAAAAGAGGTCGCATCAGTTGTTGCTGTTGTCCCTCAACATTGCATGTTTAAACCAACTGACGTCGGATTCAGAGTACACGTGGCAACAACGAAATCTTTCAAATCCTATGGTTCAGACAAGCATTCGAGGAAGACTTCCGCAGGAGGAAGCGGGGACTCTAGCCACGAAGAACTTCCCATTCTGTGCGAACGAGGTCAACCTCTTGAAGATCCTCTTCTTCAATCCCACAGTGCTCCTCCCTCCTCCATGACCCCCACCACTAGCCCCTACCATAGCGGAGAGGTTATTGTCAAGATAGACGACGGCGACTCCAAATCCACCGGAGCAGCCACCTTACATAACGGCAGCAAGATTTGGCGGGAACCCAGCTACGACTTTTGGCAAGAGGGTGACCTGACCAGCCCCAAGAATGTGAGGGAGCATGAAGAAAGCTTCGATTTCCAACAACCTGGCCTGAATTCCGAGGACCCTCCATCCAAGCTCATTGGTAAATTCTTGCACAAACAGAAACTCTCCGGCGACATGTCTCTCGATATGGATTTAGACATGGATGAGCTCCGAGAATTTCATCACCGGCATTTGCCTCCGGTCGACGAGTCTCCGTCGGTGAGTCGTTTCTCCAAGGAGCTCAAAGTCTCTTTCGAAGAACCGCCTTCCAATTCCTTCGAGGATTTAAATGATTCCATTAGACGAAGGTGCAAGGATACACCGATCATTGAGGAATGTCAAAAACCGCCACAGCCTCCGCAACACGACCGTCGTGGGTCAACTCCAAATGTTTATCCTGGAAATGGTGATGGTGAGGTTCTGAGATGTACCTCAAATGTGTCTTTCGAAAGAAACCTTTCATTGCAGAGGAAATCGGGTTTGCTCAGGGCAAAAACCAAATCAAGATTGATTGACCCGCCAGATGAGCCCGACCGCAAATCGGAACGGGTCCCGAGATCGGGTCAAATGTTTTCAGGTTTGCAACAGGGGAATAAGAAAGCAGATGAAGAGGAAGACGATCCATTTACGGAAGAGGATCTTCCGGATGAGTTCAAGAAGACACAATTTAGCATATGGATTCTTCTAGAATGGTTGAGTTTGATTTTGATTGTTACCGCATTGATAACCACACTCTGTATCCCAGCCCTGAGGGACAAAAATCTCTGGAAGCTCAAGTTATGGAAATGGGAGGTGTTGGTTTTGGTTCTAATTTGTGGTCGGTTAGTTTCTGACTGGGTGATTAGAATTGTGGTATTCTTTATTGAAAGGAATTTCCTTTTGCGCAAGAGAGTTCTGTATTTTGTTTATGGTGTGAGGAAGGCAGTTCAAAATTGCTTATGGTTAGGTCTTGTTTTAACCGCTTGGCATTTTCTATTCGATCAGAGAGTTCAGAGGGAGACAAGAAACGAGATCCTAGAATATGTCACCAAGATCTTGTTCTGTTTCTTGGTGGGTACTTTGGTATGGTTGGTAAAAACTCTTGTGGTCAAGGTTTTGGCTTCTTCTTTCCATGTGAGCACATATTTTGATAGGATTCAAGAATCACTGTTCAATCAATTTGTAATTGAAACACTATCTGGGCCACCATTGGTAGAACTTCAAAGGCAAGAGGAAGAGGAAGAAAAGCTTGCTGATGAGGTTCTGAAGCTTCAGAATGCAGGGGTTACCATACCCCCAGATCTTAGGGCTTCTGCCTTTGGTTCTTTCAAGAGTCCAAGGGTGACGAGGAGTGGATTGCTTCAGAAAAGCCCTCATCTGAAAAGTGGCAAGTTCTCTCGACCACTTTCAAAGAAATCAGATGATGGGATACCGATTGATTACTTACATAAGTTGAACCCGAAGAATGTCTCTGCGTGGAATATGAAAAGGTTAATGAATATGGTGCGACATGGGGCTCTTTCCACATTGGATGAGCAAATACTTGATTCAACTCATGAAGATGAACATATCACACAGATAAGGAGTGAAAATGAGGCAAAAGCAGCAGCAAAGAAGATATTTCACAATGTTGCGAGGCGGGGATCCAGGTTCATATACCTGGAGGACTTGTTGCACTTTATGCGAGAAGATGAAGCTGTTAAAACCACGACTCTCTTCGATGGAGCAAGTGAGACTGGAAAAATCAGTAAATCAGCCTTGAAGAACTGGGTGGTGAATGCATTCAGAGAGAGACGAGCACTTGCTTTGACATTGAATGATACCAAAACCGCAGTGAACAAACTTCATCGAATGCTCAATTTTTTAGTGGGCATTATTATACTGGTTATTTGGCTCCTAATATTGGAAATCGCCACCAGCAAATTTCTTCTATTTGTGAGCTCCCAGCTCGTGTTAGTTGCATTTATATTTGGAAATACCTGCAAGACCATATTTGAAGCAATCATTTTCTTATTTGTCATGCACCCTTTTGACGTCGGAGATAGATGTGAAATTGAAGGGGTTCAGATGGTTGTGGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGACAATCTAAAGGTAATGATCCCTAACAGTGTTCTTGCTACCAAGGCCATAAATAATTTCTACCGGAGTCCTGACATGGGCGATGCTCTTGAGTTCTTAGTACATATAACTACCCCAGCTGAAAAGATTGCACTTATCAAGCACAAAGTACAGAGTTACATGGAAAGCAAGAAAGAACACTGGTATCCTTCACCTATGATAGTGTTTAAGGATCACGAATCACTGAACATGATAAGAATGGCAATTTGGCCAACCCACAGAATGAACCACCAAAACATGGGAGAAAGATACATCAGAAGATCCCTTTTGATTGAAGAGATGGTCAAGATCTTCCGAGAGATCGACATCCAGTTCAGACTCCTTCCCCATGATATTAACGTTCGAAGCATGCCCACCACTTCTGAACGGCTTCCTCCTGGTTGGGTCACGGCCACAAGTTAG 3057 0.4393 MSKVLPLQLNKEKIVGSETEYTGRDVLFVQLLPFLTFQRRKTKRKKEVASVVAVVPQHCMFKPTDVGFRVHVATTKSFKSYGSDKHSRKTSAGGSGDSSHEELPILCERGQPLEDPLLQSHSAPPSSMTPTTSPYHSGEVIVKIDDGDSKSTGAATLHNGSKIWREPSYDFWQEGDLTSPKNVREHEESFDFQQPGLNSEDPPSKLIGKFLHKQKLSGDMSLDMDLDMDELREFHHRHLPPVDESPSVSRFSKELKVSFEEPPSNSFEDLNDSIRRRCKDTPIIEECQKPPQPPQHDRRGSTPNVYPGNGDGEVLRCTSNVSFERNLSLQRKSGLLRAKTKSRLIDPPDEPDRKSERVPRSGQMFSGLQQGNKKADEEEDDPFTEEDLPDEFKKTQFSIWILLEWLSLILIVTALITTLCIPALRDKNLWKLKLWKWEVLVLVLICGRLVSDWVIRIVVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLTAWHFLFDQRVQRETRNEILEYVTKILFCFLVGTLVWLVKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVELQRQEEEEEKLADEVLKLQNAGVTIPPDLRASAFGSFKSPRVTRSGLLQKSPHLKSGKFSRPLSKKSDDGIPIDYLHKLNPKNVSAWNMKRLMNMVRHGALSTLDEQILDSTHEDEHITQIRSENEAKAAAKKIFHNVARRGSRFIYLEDLLHFMREDEAVKTTTLFDGASETGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVGIIILVIWLLILEIATSKFLLFVSSQLVLVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIEGVQMVVEEMNILTTIFLRYDNLKVMIPNSVLATKAINNFYRSPDMGDALEFLVHITTPAEKIALIKHKVQSYMESKKEHWYPSPMIVFKDHESLNMIRMAIWPTHRMNHQNMGERYIRRSLLIEEMVKIFREIDIQFRLLPHDINVRSMPTTSERLPPGWVTATS 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0050 1018 MobiDBLite consensus disorder prediction 282 313 - -
Dere06g0050 1018 PIRSF Memb_At2g17000 124 1017 IPR016688 -
Dere06g0050 1018 MobiDBLite consensus disorder prediction 339 387 - -
Dere06g0050 1018 Pfam Mechanosensitive ion channel 785 989 IPR006685 GO:0016020|GO:0055085
Dere06g0050 1018 Gene3D - 843 892 IPR023408 -
Dere06g0050 1018 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 124 1013 IPR016688 -
Dere06g0050 1018 MobiDBLite consensus disorder prediction 342 359 - -
Dere06g0050 1018 Coils Coil 571 594 - -
Dere06g0050 1018 MobiDBLite consensus disorder prediction 120 136 - -
Dere06g0050 1018 FunFam Predicted mechanosensitive ion channel 843 892 - -
Dere06g0050 1018 MobiDBLite consensus disorder prediction 79 102 - -
Dere06g0050 1018 SUPERFAMILY Sm-like ribonucleoproteins 833 892 IPR010920 -
Dere06g0050 1018 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0050 Dere-ChrDere06 589150 596045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0050 139 1018 Mechanosensitive Ion Channel Family AT1G78610 58.068 0.0 959