Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere06g0045 | ATGGAAGCTGTGTTCCTGAGCAAACCTGCTTCCCACCTCAATCTATCTTCCAGACATAAACATTCTATTCCTTCTTCTTTTCCTTTTCCTACTCAATCCCTTCGGCTTCAACCATCCCACAACTCCCTGTTCACCGTATGCGCCATCCAAAACCAAGAAAAGCAAATCTTCCAGGACACACCTGCAGCCAATCCCATCGCAAGTGAAGATGAATCCTACGGCGAGGTTAAGGGGATCATCGGAAGCAGAGCCCTGGAGGGCGTTACAGGCATGGAGTACTTGATTGAGTGGAAAGACGGTCATGCCCCTTCCTGGGTCCCTTCCGATTTCATCGCCAAAGACGTCGTGGCCGAGTACGAGACTCCGTGGTGGACTGCCGCCAAGAAAGCCGACGAGTCCGCTCTCAAGCAGCTCATCGACGCCGACGACGGCCGCGACATCGACGCAGTCGACAGCGACGGGCGAACCGCGCTCCTGTTCGTATCGGGTCTGGGGTCGGAGCCGTGCGTGAGGGCGCTCGCCGAAGCAGGCGCTAATCTGGACCATCGCGACAGCTCCGGCGGCTTGACGGCGCTTCACATGGCTGCAGGGTACGTGAGGCCGGGGGTAGTGAAGCTTCTGGTGGATCTGGGTGCGGATGTGGAGGTTGAAGACGATAGAGGACGCACACCCTTAGAATTGGCGAAGGAAATTCTGAATGCGACGCCGAAGGGGAATCCGATGCAGTTTGGGAGGAGGATAGGGCTTGAGAGTGTGATAAGAGCATTGGAGGAGACAATATTCGAGTACGCGGAGGTGGAGGAGATAGTGGAGAAGAGGGGGAAGGGTGAAAATTTGGAGTATTTGGTGAAGTGGAAGGACGGAGGAGGGAACGAGTGGGTGAAGGCGAAGTTCGTAGCAGAGGATTTAGTGAGCGACTACGAAGCCGGGTTGGAATATGCGGTGGCGGAGGCCGTGGTGGGAAGAAGGGATGGAGATGATGGGCAACCGGAGTTTCTGGTGAAATGGGTCGACATGGAGCAGCCCACGTGGGAGCCCCAGGACAATGTGGATCCTGAGCTTGTTACGGAATTTGAAGAAACTCAACAGACGACTTCTGTTTCGGTTTTTGATAATACCAGCCCATGA | 1128 | 0.5514 | MEAVFLSKPASHLNLSSRHKHSIPSSFPFPTQSLRLQPSHNSLFTVCAIQNQEKQIFQDTPAANPIASEDESYGEVKGIIGSRALEGVTGMEYLIEWKDGHAPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKQLIDADDGRDIDAVDSDGRTALLFVSGLGSEPCVRALAEAGANLDHRDSSGGLTALHMAAGYVRPGVVKLLVDLGADVEVEDDRGRTPLELAKEILNATPKGNPMQFGRRIGLESVIRALEETIFEYAEVEEIVEKRGKGENLEYLVKWKDGGGNEWVKAKFVAEDLVSDYEAGLEYAVAEAVVGRRDGDDGQPEFLVKWVDMEQPTWEPQDNVDPELVTEFEETQQTTSVSVFDNTSP | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere06g0045 | 375 | SUPERFAMILY | Chromo domain-like | 70 | 123 | IPR016197 | - | |
| Dere06g0045 | 375 | SUPERFAMILY | Chromo domain-like | 262 | 310 | IPR016197 | - | |
| Dere06g0045 | 375 | SMART | chromo_7 | 313 | 363 | IPR000953 | - | |
| Dere06g0045 | 375 | SMART | chromo_7 | 72 | 124 | IPR000953 | - | |
| Dere06g0045 | 375 | SMART | chromo_7 | 262 | 312 | IPR000953 | - | |
| Dere06g0045 | 375 | PANTHER | MYOTROPHIN | 75 | 285 | - | - | |
| Dere06g0045 | 375 | ProSiteProfiles | Ankyrin repeat region circular profile. | 187 | 219 | - | - | |
| Dere06g0045 | 375 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 314 | 370 | IPR000953 | - | |
| Dere06g0045 | 375 | Gene3D | - | 260 | 309 | - | - | |
| Dere06g0045 | 375 | Gene3D | - | 69 | 117 | - | - | |
| Dere06g0045 | 375 | Gene3D | - | 310 | 362 | - | - | |
| Dere06g0045 | 375 | ProSiteProfiles | Ankyrin repeat profile. | 153 | 185 | IPR002110 | GO:0005515 | |
| Dere06g0045 | 375 | ProSiteProfiles | Ankyrin repeat profile. | 187 | 219 | IPR002110 | GO:0005515 | |
| Dere06g0045 | 375 | SMART | ANK_2a | 118 | 149 | IPR002110 | GO:0005515 | |
| Dere06g0045 | 375 | SMART | ANK_2a | 153 | 182 | IPR002110 | GO:0005515 | |
| Dere06g0045 | 375 | SMART | ANK_2a | 187 | 216 | IPR002110 | GO:0005515 | |
| Dere06g0045 | 375 | Pfam | Ankyrin repeats (many copies) | 173 | 228 | IPR002110 | GO:0005515 | |
| Dere06g0045 | 375 | SUPERFAMILY | Ankyrin repeat | 119 | 230 | IPR036770 | - | |
| Dere06g0045 | 375 | CDD | CD2_cpSRP43_like | 262 | 309 | - | - | |
| Dere06g0045 | 375 | Gene3D | - | 118 | 259 | IPR036770 | - | |
| Dere06g0045 | 375 | CDD | CD3_cpSRP43_like | 311 | 359 | IPR030300 | - | |
| Dere06g0045 | 375 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 316 | 360 | IPR023780 | - | |
| Dere06g0045 | 375 | SUPERFAMILY | Chromo domain-like | 312 | 361 | IPR016197 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere06g0045 | 141 | 213 | CAMTA Transcription Factor Family | AT5G09410 | 38.356 | 5.97e-07 | 49.7 |