Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0041 ATGGCTTTCTTCCTTCTCTTCCTCTGCCTTCTTGCTTCCTCTGCTACTGCTTGCGATCGCTGCCTTCACCAATCTAAGGCTGCATACTTCTCTAAAGCATCTGCTCTTTCATCTGGGGCGTGCGGGTATGGCTCATTGGCCGTGGGATTAAGTGGTGGACACCTTGCAGCTGCTGTGCCTTCGCTGTACAAAGATGGAGCCGGTTGTGGTGCGTGCTTTCAGATAAGATGCAAGAACCCGAGTTTGTGTACAAGAACAGGAACCACGGTGGTTCTGACTGATCTCAACAACAACAATCAAACTGATTTTGTACTCAGCAGCAGAGCCTTCGCGGCCATGGCTCAGAAGGGTATGAGTCAAGAAATTTTGAAGCTTGGAATTGTTGACGTTGAATACAAGAGAGTACCATGTGAATACAAAAACCAAAACTTGGCAGTGCGGGTGGAAGAATCAAGCAAGAAACCAAATTACTTGGCAATAAAATTTTTGTATCAAGGTGGACAAACAGAGATAGTAGGGGTGGATGTAGCTCAGGTAGGGTCTTCAAACTGGAGTTTCATGAGCAGAAAGAATGGGGCAATATGGGACACAGATAGGGTACCTGCAGGTGCATTGCAGTTCAGAATGGTGGTAACAGCTGGTTTTGATGGAAAATGGATATGGGCTCGCAAAGTGCTACCTGTAGACTGGAAAACTGGAGTGGTGTACGACACTGGTGTTCAGATCACAGACATTGCAAAAGAGGGTTGTTCTCCCTGCGACGATGGCCCTTGGTCATGA 780 0.4718 MAFFLLFLCLLASSATACDRCLHQSKAAYFSKASALSSGACGYGSLAVGLSGGHLAAAVPSLYKDGAGCGACFQIRCKNPSLCTRTGTTVVLTDLNNNNQTDFVLSSRAFAAMAQKGMSQEILKLGIVDVEYKRVPCEYKNQNLAVRVEESSKKPNYLAIKFLYQGGQTEIVGVDVAQVGSSNWSFMSRKNGAIWDTDRVPAGALQFRMVVTAGFDGKWIWARKVLPVDWKTGVVYDTGVQITDIAKEGCSPCDDGPWS 259
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0041 259 PRINTS Major pollen allergen Lol pI signature 77 87 IPR005795 GO:0005576|GO:0019953
Dere06g0041 259 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Dere06g0041 259 PRINTS Major pollen allergen Lol pI signature 57 68 IPR005795 GO:0005576|GO:0019953
Dere06g0041 259 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Dere06g0041 259 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Dere06g0041 259 PRINTS Major pollen allergen Lol pI signature 214 231 IPR005795 GO:0005576|GO:0019953
Dere06g0041 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Dere06g0041 259 CDD DPBB_EXLA_N 13 139 - -
Dere06g0041 259 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Dere06g0041 259 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Dere06g0041 259 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Dere06g0041 259 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Dere06g0041 259 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Dere06g0041 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Dere06g0041 259 PANTHER EXPANSIN-B3 10 241 - -
Dere06g0041 259 Pfam Expansin C-terminal domain 145 227 IPR007117 -
Dere06g0041 259 Gene3D - 10 138 IPR036908 -
Dere06g0041 259 SUPERFAMILY Barwin-like endoglucanases 6 141 IPR036908 -
Dere06g0041 259 SUPERFAMILY PHL pollen allergen 143 237 IPR036749 -
Dere06g0041 259 FunFam Expansin-like A2 139 243 - -
Dere06g0041 259 Pfam Lytic transglycolase 57 132 IPR009009 -
Dere06g0041 259 Gene3D - 139 243 IPR036749 -
Dere06g0041 259 SMART dpbb_1 56 132 IPR007112 -
Dere06g0041 259 FunFam Expansin-like A2 11 138 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere06g0041 Dere-ChrDere06 490540 492146 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0041 15 259 Expansin Gene Family AT4G38400 68.826 1.72e-119 340