Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0017 ATGTATAGGATCTGTCGGAGAGAATTGCGGGTGAACATGGAATATGGTGCCTTGGTGCACAATAATCCTGCATTTGAGGCCTTGTCGGAGAGTACTGCCTCAATCTCTGAAGTGGATTTCATGGACGAGCTCTTTGTACAAGGTTGCTGGCTAGAAACCACTGGTGGATCATACAACTTGACGCAGCCCTGTGGTACGAATCCCCCATCTCTCAATGACCCTAATTTACACTATTGGACATCCGCAGACCCAAATCACCAAATCTATCAGCAAGAATCGGAGGCAAGTTATTCATTCCAATCAGAAAGTTTTGTGGTTGAAAGCACTGAAGTGGGCAAGAGATGGTGGATCGGACCGAAGGCAAATCCTGGTCCGTCTTCCTCAGTCAAAGAAAGACTGGTGCTTGCCGTTGGGTACTTAAAAAAATACGCCAAAAATGCCAATTTGCTTATTCAGATATGGGTGCCCATTAGGAGAGAGGGAACATACGTACTTACCAGCACTCACGATCACGATCACGATCACGATCATCCATACTCGTCATCACTTGATCCAAATTGTAAGACTCTTGAATATCACAGAAATGTTTCCAAAGGTTATCAGTTGGCAGCTGAGGCGGATTCAGAAGAGTGTCGAGTAATCCTAGGAAAATTGCCTGATCAGTGGGACCTCAATGTACGGTTTTTCGAAAGCCACGACGGGACATGCCTCGGTGTTGTTGAGATAGTAATGACCAATCACAACATCAACTGTCGCCCACAACTTGACAATGTCTCCCATTCTCTCCAGGCTGTTGATTTTAGGAGTTGTCAGAACCTCATCCCTCCCACCGTGAAGGTATTTGACGAGTTGTACCATGCTGCACTAGATGAGATTGTAGAGGTGTTGACGTCTGTGTGCAAGACGCATAATTTGCCTTTAGCTCTGACTTGGGCACCATGCGTCCAACAAGGTAAGGGAGGATGTCCACATAATTTAAACGAGAACTATGTGTATTGTTTGTCCACTGTGGATTCTGCTTGTTACGTGGAAGATTTAGAGTTAATGGGGTTCCAGGATGCCTGCTCCGAGTACCACCTTTCTAGAGGGCAAGGCATTGTTGGCACAGCTTTCACAACCACCAAACCATTCTTTGCTACAGACATAACAGCCTTCAGCAAAATTGAATATCCTCTGTTTCATTATGCTACCATGTTTGGGTTGCAAGCCGCTGTCGCTATTCCCCTCCGTAGTGTCTACACCGGATCAGCTGATTTTGTGTGGGAATTTTTCTTACCAAAGGATTGCCATGACGGCGAAGAACAAAAGCAGATGCTGAATTCATTATCTATTGCGGTACAGCAAGCTTGCCGGAGTTTACATGTTGCCATGGACAAACAAATTGAGGAAGAATTCACGTTTACAGTTCGAGAAATGTTGGCTGCTGCTTCAAAAGGTGGACCCTACAAAGAAGAAACTCTTGAATTTGGGTCTCCTAAATTAGAAGAACCATCTTCAAAAGAATCCACCTGGATTGCGCATATGATGGAGGCCCAAACGCAACAGAAGGGGAAAGGCGTGTCGGTGTCCTTGGAATACCTGGAAGAACCAAAACAAGAGTTCAAAGTGACAACCAACTGGGATGGGAGTCATAAGGGATTCTGCAACGGACAGTTGTTTTCAGATTATGGACAAGTTCAGCAGAGTTCAGCAGCATCCAGAGCAACTGTAGAGGGTGGAGGAGAATCTTATACTTTTGGTGGACGTCGCTCGACAGGTGGCAGAAAATCAGGCGAGAAGCGACGAACCAAGGTAGAGAAGACCATCAGCTTGCCAGTTCTTCGACAATACTTTGCAGGAAGCCTTAAAGATGCTGCCAAGAGCGTCGGCGTAAGTCCCACGACTCTTAAAAGGATATGCAGACAACATGGAATTACCAGGTGGCCTTCGAGCAAAATAAAGAAGGTAGGACACTCGTTAAGGAAACTTCAGCTTGTGATCGATTCAGGACAGGGTGCAGAGGGTGCCATTCAGATTGGGTCCTTCTATTCGAGTTTTCCAGAATTGAGCTCCACAGATTTGTCTGCAGGTGGTCCTTCTCACTCATCAAATATCAGTGACCATTCTAAGAAAAAACACCTTCGACCCGAGAATGGCTTGTATACCCATGGAGGCACAACACTAAAATCCCCACCCTCTTGTTGCAGCCAGACTTCCACCATCATCAATGCCATGTCTAATGGAGATGCTGTAATGACTGAAAATCCAGAAGGGTTGTTCAAGAGAGCTCACACTCACAGTGAAGCACAGTTGCAACAGGAGACAAAACATTTCGCAAGTCAACTAAGTGTTGAGGCTCTGCCTCCCTTGCCTGAAAATAGTGGGTGGAACTCACGACATGGAGGTGCTTTTAGGGTGAAAGCTACTTTTGGGAATGAAAAAATCCGTTTTAGCTTGCAACCAAATTGGGGGCTCAGAGAATTACAACTGGAGATCGCTAGACGATTCAATCTAGATGATATTGGCAACATTGATCTCAAGTATTTGGATGATGATGGTGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGAGGAGTGTAAAGACATATATACATCATCTCAAAGCCGTACAATTAGGTTCTCCTTGTTTCAAGCTTGGCCCCCAAATCTAGCAGACACTTCTGGCAACAGCAGCCCATCCTGA 2685 0.4551 MYRICRRELRVNMEYGALVHNNPAFEALSESTASISEVDFMDELFVQGCWLETTGGSYNLTQPCGTNPPSLNDPNLHYWTSADPNHQIYQQESEASYSFQSESFVVESTEVGKRWWIGPKANPGPSSSVKERLVLAVGYLKKYAKNANLLIQIWVPIRREGTYVLTSTHDHDHDHDHPYSSSLDPNCKTLEYHRNVSKGYQLAAEADSEECRVILGKLPDQWDLNVRFFESHDGTCLGVVEIVMTNHNINCRPQLDNVSHSLQAVDFRSCQNLIPPTVKVFDELYHAALDEIVEVLTSVCKTHNLPLALTWAPCVQQGKGGCPHNLNENYVYCLSTVDSACYVEDLELMGFQDACSEYHLSRGQGIVGTAFTTTKPFFATDITAFSKIEYPLFHYATMFGLQAAVAIPLRSVYTGSADFVWEFFLPKDCHDGEEQKQMLNSLSIAVQQACRSLHVAMDKQIEEEFTFTVREMLAAASKGGPYKEETLEFGSPKLEEPSSKESTWIAHMMEAQTQQKGKGVSVSLEYLEEPKQEFKVTTNWDGSHKGFCNGQLFSDYGQVQQSSAASRATVEGGGESYTFGGRRSTGGRKSGEKRRTKVEKTISLPVLRQYFAGSLKDAAKSVGVSPTTLKRICRQHGITRWPSSKIKKVGHSLRKLQLVIDSGQGAEGAIQIGSFYSSFPELSSTDLSAGGPSHSSNISDHSKKKHLRPENGLYTHGGTTLKSPPSCCSQTSTIINAMSNGDAVMTENPEGLFKRAHTHSEAQLQQETKHFASQLSVEALPPLPENSGWNSRHGGAFRVKATFGNEKIRFSLQPNWGLRELQLEIARRFNLDDIGNIDLKYLDDDGEWVLLTCDADLEECKDIYTSSQSRTIRFSLFQAWPPNLADTSGNSSPS 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0017 894 Pfam PB1 domain 797 878 IPR000270 GO:0005515
Dere06g0017 894 SMART PB1_new 796 879 IPR000270 GO:0005515
Dere06g0017 894 ProSiteProfiles RWP-RK domain profile. 588 669 IPR003035 -
Dere06g0017 894 PANTHER PROTEIN NLP8 84 887 IPR045012 GO:0003700
Dere06g0017 894 MobiDBLite consensus disorder prediction 566 597 - -
Dere06g0017 894 SUPERFAMILY CAD & PB1 domains 786 882 - -
Dere06g0017 894 CDD PB1_NLP 797 878 IPR034891 -
Dere06g0017 894 Gene3D - 795 882 - -
Dere06g0017 894 MobiDBLite consensus disorder prediction 686 706 - -
Dere06g0017 894 ProSiteProfiles PB1 domain profile. 796 879 IPR000270 GO:0005515
Dere06g0017 894 Pfam RWP-RK domain 602 649 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0017 Dere-ChrDere06 289195 292777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0017 22 890 NLP Transcription Factor Family AT4G35270 44.696 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dere06g0017 PB1 1.1e-17 CL0072