Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0011 ATGTATTCTTTGTATTTAATATGGCCTGGCCTTGACACCGTAAATAGAACTGGCCTTGACACCCCAAATGGAATGAGTCAGAGGGGTAGTCCCCAAGTGCAAGTTGTTCGGTTCATCCTCCTTCAAAGTCGGTTCGTCAGAATTCAGCCGAAGAAATCCCTTTCTGCGTACTGCAAAACTACTTCCAATTTCTGCCAGATTCAAATGGGGATTTGCTGGGGTTCTCCAGCTGGCAACCCAAACTCAACCCCGAGCACAACCGGTCAACTTAGTACAGCTACTAGGGGAACATCTCGGACGACCAGCAGTACAACATCTTCTGGAAGTGGTAACAACTCCACAAATAGCCATTTCTCGGTGTCTAGTGGTGATGAAGCTTATCCAAATGGGCAGATCTTACCGACCCCAAATTTGAGGATGTTCACTTTTGCTGAATTGAAGGCTGCAACTAAGAATTTTAGAGCTGATACAGTTCTTGGGGAGGGAGGTTTTGGAAAAGTCTTCAAGGGATGGCTTGAAGAGAGGACAGCGTCAAAGAATGGAAGTGGAACAGTCATTGCTGTAAAAAAATTGAACTCAGAGAGCTTACAGGGGTTTGAGGAGTGGCAGTCAGAGGTAAGTTTTCTAGGACGCCTTTCTCATCCTAACCTTGTTAAGCTTTTGGGATACTGTTGGGAGGAGACAGAGCTACTTCTCGTCTATGAATTCATGCAAAAGGGCAGTTTGGAAAATCATCTATTTGGAAGGGGTTCTGCTGTTCAGCCACTTCCTTGGGACATAAGGCTTAAGATTGCAATTGGAGCAGCCCGCGGCCTGGCATTTTTGCACACATCTGAGAAAGTAATTTACAGAGATTTCAAGGCCTCCAACATATTGCTCGATGGGTTTTATAACGCAAAGATGTCAGACTTTGGCTTGGCAAAATTGGGTCCTTCGGCTAGTCAATCCCATGTGACGACAAGAGTGATGGGCACATATGGTTATGCAGCTCCTGAGTATGTGGCCACAGGGCATCTGTACGTAAAGAGTGATGTGTATGGATTTGGGGTTGTGTTGGTTGAGATGCTGACAGGGCTACGGGCGCTTGACACCAACCGTCCAAGTGGGCAACATAATCTAGTGGACTGGATCAAACCGTACCTACAAGACAGAAGAAAACTGAAGGGCATTATGGATTCTCGGTTGGAGGGAAAATATCCATCCAAAGCCGCATTTCGTATAGCTCAGCTTGCTTTAAAATGTCTCGCAGTTGAGCCCAAATTACGGCCATCAATGAAGCAAGTTTTGGAGAACTTGGAGCGGATTCAAGCTGCCGTTGACAAACCTGTGCCTCCCACTCTTGGTCAAGCACAGCAATCTGTGCATCTTCCAAATCCAAACTCATCCCGTCTAAGACCACCCAATCGCTGA 1410 0.4638 MYSLYLIWPGLDTVNRTGLDTPNGMSQRGSPQVQVVRFILLQSRFVRIQPKKSLSAYCKTTSNFCQIQMGICWGSPAGNPNSTPSTTGQLSTATRGTSRTTSSTTSSGSGNNSTNSHFSVSSGDEAYPNGQILPTPNLRMFTFAELKAATKNFRADTVLGEGGFGKVFKGWLEERTASKNGSGTVIAVKKLNSESLQGFEEWQSEVSFLGRLSHPNLVKLLGYCWEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGFYNAKMSDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEMLTGLRALDTNRPSGQHNLVDWIKPYLQDRRKLKGIMDSRLEGKYPSKAAFRIAQLALKCLAVEPKLRPSMKQVLENLERIQAAVDKPVPPTLGQAQQSVHLPNPNSSRLRPPNR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0011 469 CDD STKc_IRAK 159 435 - -
Dere06g0011 469 FunFam Serine/threonine-protein kinase BIK1 120 236 - -
Dere06g0011 469 SUPERFAMILY Protein kinase-like (PK-like) 132 444 IPR011009 -
Dere06g0011 469 PANTHER OS01G0588500 PROTEIN-RELATED 105 436 - -
Dere06g0011 469 FunFam Serine/threonine-protein kinase PBS1 237 449 - -
Dere06g0011 469 MobiDBLite consensus disorder prediction 446 463 - -
Dere06g0011 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Dere06g0011 469 MobiDBLite consensus disorder prediction 80 126 - -
Dere06g0011 469 Pfam Protein tyrosine and serine/threonine kinase 156 432 IPR001245 GO:0004672|GO:0006468
Dere06g0011 469 ProSiteProfiles Protein kinase domain profile. 153 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g0011 469 Gene3D Phosphorylase Kinase; domain 1 137 236 - -
Dere06g0011 469 MobiDBLite consensus disorder prediction 443 469 - -
Dere06g0011 469 ProSitePatterns Protein kinases ATP-binding region signature. 159 190 IPR017441 GO:0005524
Dere06g0011 469 Gene3D Transferase(Phosphotransferase) domain 1 237 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0011 Dere-ChrDere06 182486 186823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0011 130 440 Receptor kinase-like Gene Family AT4G02010 50.316 5.70e-101 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere06g0011 PK_Tyr_Ser-Thr 5.8e-46 CL0016