Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0003 ATGGATAACGAGGTGCTTGAATTTGACATTGGATTGGGAGGAGGAGAAGGAGATGGCCTCGGCGACGATGATGGGGGGGACATGGAGCAACCCATTGATGAGGACGATTTGGCTTATAGCCCTCCTCCTAGCAGTGGTGGGGGAGGTGCTGCTGGTAGTGGTGAAATATATCTTCCTGAGGGTGACCTCTCGGATCTTGAACCTTACGAGGGCATGGAATTCGAGTCTGAGGAGGCCGCGAAGGCCTTCTATAACTCCTATGCTCGTCGTGTTGGGTTCAGTACGCGTGTCAGCTCATCCCGCCGTTCCAGGCGTGATGGAGCTATTATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTCCGCAATATGAATGAGAAACGCACAAAGGATAGAGAGATTAAGCGCCCACGAACCATCACTAGAGTGGGATGCAAAGCGTCATTATCTGTGAAAATGCACGACTCTGGCAAGTGGATCGTGTCTGGGTTTGTTAGAGAACATAACCACGAACTCGTTCCGCCCGATCAGGTGCATTGCCTCCGCTCTCACAGGCAAATATCAGGAGCTGCTAAGACGCTTATTGATACTTTACAGGCTGCTGGAATGGGTCCTCGCAGAATCATGTCAGCACTCATAAAAGAGTATGGAGGGATTAGTAAAGTCGGTTTTACAGAGGTTGACTGTCGGAATTACATGAGGAATAATCGTCAGAGAAGTTTGGAAGGAGACATTCAACTTGTTTTGGATTATTTGAGGCAAATGCATGCTGAAAACTCTAATTTCTTCTATGCTGTGCAAGGTGACGAGGATCAGTGCATGAACAACGTTTTCTGGGCTGATCCCAAGGCAAGGATGAACTATACATTTTTTGGTGATACCGTCACTTTTGACACTACTTACCGATCTAATAGATACCGGCTACCTTTCGCTCCCTTCACCGGTGTCAACCATCATGGTCAACCTGTTCTCTTTGGGTGTGCTTTCTTAATAAATGAATCAGAAGCATCATTTGTATGGCTTTTTAAGACATGGCTTATGGCGATGTCTGGACGCCCTCCAGTGTCAATAACAACTGATCATGATTCGGTTATACGGTCAGCCATAATACAAGTATTCCCAGAGACCCGTCACCGTTTCTGCAAGTGGCACATCTTTAAAAAATGTCAGGAGAAGTTATCTCACATTTTTCTCAAACATCCAAATTTTGAAGCTGAATTTCACAAATGCGTTAACTTGACTGAGTCAACTGAGGAATTTGAATCTTGCTGGTTAACACTTGTGGAGAGATATGATCTCAGGGACCATGAATGGCTTCAAGCAATATATTCTTCTCGGAGGCAGTGGGTACCTGTGTATCTGCGAGACACGTTCTTTGCAGAAATGTCCATAACTCAGCGAAGTGATAGCATGAACTCATACTTTGATGGCTATGTGAATGCTTCAACCAATTTGAATCAATTCTTTAAGCTGTATGAGAAAGCACTAGAAAGTCGCAATGAGAAAGAAGTAAGAGCAGATTATGACACAATGAATACTTCGCCCATATTGAGGACCCCATCTCCAATGGAAAAACAAGCATCTGAGCTGTACACTAGAAAAATTTTCATGAGGTTCCAAGAAGAGTTAGTTGGGACACTAACATTCATGGCATCCAAGGCCGAGGATGATGGAGAGGTCATTACATATCATGTAGCTAAATTTGGGGAGGACCATAAAGCATACTATGTTAAATTCAATGTTTTGGAGATGAAAGCAACTTGTAGTTGCCAAATGTTTGAATTCTCAGGCCTCCTTTGCAGACATGTTTTGGCTGTCTTTAGAGTAACCAATGTGCTTACTCTCCCATCTCATTACATATTGAAACGTTGGACCAGAAATGCCAAGAGCAATGTAATATTAGAAGATCATTCTACTGATGTATATACTTATTATTTGGAATCTCATACTGTTAGATATAATACCCTCCGACATGAGGCCTTCAAATTTGTTGATGAAGGCGCAAAGACTCTTGAAACTTATGATGTGGCAATGGATGCTTTGCAAGAAGCTACAAAAAGAGTTGCTGAGGCAATGAAAAATGAGGGAAGGACTCCCATCAGCAATGGTAGAGTTCGGAGTTGCTTGCTGAATGATGGAAATCGTATAAATTACACAAGGGGGATGCATGAAGAAAGCTTGGGCCAGCATATGTCAGAGGATGATATGGACAAGAATATTAGAGAACTTATGAATGAGCTTGAATCTGCCAATCGAAAGTGTGACATTTACCGGTCCAACTTGCTTTCGGTTTTAAAAGCTGTTGAGGATCACAAATTGGAGTTGTCAGTTACGGTGCAAAACATCAAGATCAGCATGAAAGATGGTCTCTGA 2373 0.4315 MDNEVLEFDIGLGGGEGDGLGDDDGGDMEQPIDEDDLAYSPPPSSGGGGAAGSGEIYLPEGDLSDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWIVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHAENSNFFYAVQGDEDQCMNNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPVSITTDHDSVIRSAIIQVFPETRHRFCKWHIFKKCQEKLSHIFLKHPNFEAEFHKCVNLTESTEEFESCWLTLVERYDLRDHEWLQAIYSSRRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEKALESRNEKEVRADYDTMNTSPILRTPSPMEKQASELYTRKIFMRFQEELVGTLTFMASKAEDDGEVITYHVAKFGEDHKAYYVKFNVLEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEDHSTDVYTYYLESHTVRYNTLRHEAFKFVDEGAKTLETYDVAMDALQEATKRVAEAMKNEGRTPISNGRVRSCLLNDGNRINYTRGMHEESLGQHMSEDDMDKNIRELMNELESANRKCDIYRSNLLSVLKAVEDHKLELSVTVQNIKISMKDGL 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0003 790 Coils Coil 674 694 - -
Dere06g0003 790 Pfam SWIM zinc finger 563 609 IPR007527 GO:0008270
Dere06g0003 790 ProSiteProfiles Zinc finger SWIM-type profile. 575 611 IPR007527 GO:0008270
Dere06g0003 790 Coils Coil 733 760 - -
Dere06g0003 790 Pfam FAR1 DNA-binding domain 83 174 IPR004330 -
Dere06g0003 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 62 689 IPR031052 GO:0006355
Dere06g0003 790 MobiDBLite consensus disorder prediction 20 34 - -
Dere06g0003 790 Pfam MULE transposase domain 295 388 IPR018289 -
Dere06g0003 790 MobiDBLite consensus disorder prediction 1 62 - -
Dere06g0003 790 SMART 26again6 586 613 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0003 Dere-ChrDere06 68314 72149 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Dere06g0003 MULE 3e-28 CL0219