Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0002 ATGGGATGCTTAGGATTTATTGTAGGAGCCCCCAGTTGGCCGCATCATCGGATCCTAGCATCTTTGCAGTCGGTAAAAACGTCGTCGTCGTTATCGACGTTCTCTGGTTGTACAAACAAAAATCAACGTGGAAATGGCTGCTCTAAGAAATTCCGAACTAGCCCGAGGCCTCTGTCTGCTCTGCCTGATAATAGTGATTGCTCGCACTCCGAATCAATTCCTACTAAGGATGAGGACGTTAAGGAAGGAGCACCGGAAAAGCTAGAATCAGCAGGATGGAGGCTGCTCAGTGGAAATTCAGGAATAATATCGTCATGCGTGGTTGGTCTTCTCACTGGTGGCGCTGTCGTGCTCTTCAATTATCTTGTCCATGAAATTCGTGATTTATTGTGGGATGGGATTCCCTCTCGAGGCGCCTCGTGGTTGAGAGAAGAGCCTATTCAGGCAACCTGGACTAAGGTAATCCTAATACCCACTTTTGGGGGTATGACTGTCGCCGCGTTGAACCTGCTTCTTCAACGTTTTGCTTCGGCTGGGGAGCAAGATCCATTGCCCGGCACATCTGCTTATCTCAAGTCTGCTTCCCGGTCTATAGTGAAGGCTATGGCAGCTTGCATCACCTTAGGCACCGGGAATTCCTTGGGCCCTGAAGGGCCCAGCGTTGATATTGGTACTTCCATTGCCAAAGCTGTCGGTTTTTTCTTTGACAAGAGTTCCGGCAGAATGCCCTCCCTTCTGGCCGCTGGATCTGCTGCTGGACTCTCTTCCGGTTTCAATGCTGCTGTTGCTGGTTGTTTTTTCGCTGTGGAGTCTGTCTTATGGCCATCACCTGCAGATGTATCTATATCACTTACAAATACTACTTCTATGGTAATACTTAGTGCGGTCATAGCTTCCGTTGTTTCTGAGGTTGGTCTTGGGTCTGAACCAGCCTTCAGAGTTCCAGAATATGACTTCCGTTCACCTGGTGAGCTTCCACTTTATCTATTGCTGGGTATCTTGTGTGGCATGGTGTCATTGGCCCTATCTTGGTGCACTTCATATGTGATAATAACTGTTGACAATCTTCACAAGGCCACTGGCATACCAAGAGCTTTATTTCCTGTATTGGGTGGCTTATCTGTTGGGTTGATAGCATTGGCATATCCTGAAATCCTCTACTGGGGTTTTGAGAATGTTGATATTTTGTTAGAATCTCGGCCTTTCGTTAAGGGTCTTTCCATTGACCTACTGCTTCAGCTAATAGCCATTAAGATTGTTGCAACTTCTCTGTGCCGGGCTTCTGGATTAGTGGGAGGTTATTATGCCCCATCTCTCTTTATTGGTGCAGCTACTGGGATGGCATATGGGAAATTCATTGGTTTTGTTGTTGCTGAGTTCAATCCTATAATTCATCTCTCTGTATTGGAAGTGGCATCACCCCAAGCTTATGGTCTGGTTGGTATGGCTGCAACTCTTGCAGGAGTATGTCAGGTGCCTCTTACTGCAGTTTTGCTACTTTTTGAATTGACACAGGACTATCGTATTGTTCTACCACTTCTTGGAGCTGTAGGCTTATCTTCATGGATTTCATCTATACAGACAAAGAGAGGGAATGACGGGGGTACAGAAGAGCACAATCTAAAAACCTCTGATTCAATTATTCGTCCAGAAATACCTTCCAGTAGTTCATCTCAATCATTTATTCATTGTGTCGTTGCTGAGAGTGTACCTAATTCGAATAACTTGTCTCAAGTTGAAAGTTTGCTTTATGTAGAGGATGAAAATGTTGAAACCACATATTTAAGAAGAAAAACATTTGTTTCACAAGCCATGAAAACAAGATATGTGACAGTCTCAATGTGCACACTACTTACTGAAGTAGTAAATCTCATGCTTGTGGAGAAACAGTCTTGTGCAGTGATTGTTGGTACTGATCATACTTTGATTGGCTTATTGACGCTTAGAGACATTCAAGAGAACAGCAAATTTGCAAAAGCAAGAAGCGAAAAACCCAAGGAGCTTATAGTTTCAGAACTATGCGTTTTACATGGGGGAATATGTAATGTGCCGTGGACTGCTACTCCTGATATGGATCTTCTTTCTGCTCAACTGGCTATGAAGAAACATGCAGTCAATCGAGTTCCTGTTGTTAGAAAACTCTACGAAAGGGCATATCCAGTTGGCATATTAGACAGTGACAGTATCAGTCTAACTTGCAGTGCTTTGGCCACTAAAGAGTCCCTCGCGTGA 2232 0.4449 MGCLGFIVGAPSWPHHRILASLQSVKTSSSLSTFSGCTNKNQRGNGCSKKFRTSPRPLSALPDNSDCSHSESIPTKDEDVKEGAPEKLESAGWRLLSGNSGIISSCVVGLLTGGAVVLFNYLVHEIRDLLWDGIPSRGASWLREEPIQATWTKVILIPTFGGMTVAALNLLLQRFASAGEQDPLPGTSAYLKSASRSIVKAMAACITLGTGNSLGPEGPSVDIGTSIAKAVGFFFDKSSGRMPSLLAAGSAAGLSSGFNAAVAGCFFAVESVLWPSPADVSISLTNTTSMVILSAVIASVVSEVGLGSEPAFRVPEYDFRSPGELPLYLLLGILCGMVSLALSWCTSYVIITVDNLHKATGIPRALFPVLGGLSVGLIALAYPEILYWGFENVDILLESRPFVKGLSIDLLLQLIAIKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFIGFVVAEFNPIIHLSVLEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWISSIQTKRGNDGGTEEHNLKTSDSIIRPEIPSSSSSQSFIHCVVAESVPNSNNLSQVESLLYVEDENVETTYLRRKTFVSQAMKTRYVTVSMCTLLTEVVNLMLVEKQSCAVIVGTDHTLIGLLTLRDIQENSKFAKARSEKPKELIVSELCVLHGGICNVPWTATPDMDLLSAQLAMKKHAVNRVPVVRKLYERAYPVGILDSDSISLTCSALATKESLA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0002 743 CDD Voltage_gated_ClC 109 521 - -
Dere06g0002 743 ProSiteProfiles CBS domain profile. 605 663 IPR000644 -
Dere06g0002 743 Gene3D - 585 731 IPR046342 -
Dere06g0002 743 MobiDBLite consensus disorder prediction 528 554 - -
Dere06g0002 743 FunFam Chloride channel protein 585 732 - -
Dere06g0002 743 MobiDBLite consensus disorder prediction 32 84 - -
Dere06g0002 743 MobiDBLite consensus disorder prediction 70 84 - -
Dere06g0002 743 Pfam Voltage gated chloride channel 191 524 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere06g0002 743 Gene3D Clc chloride channel 95 539 - -
Dere06g0002 743 SUPERFAMILY CBS-domain pair 596 725 IPR046342 -
Dere06g0002 743 PRINTS Chloride channel signature 200 219 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere06g0002 743 PRINTS Chloride channel signature 251 270 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere06g0002 743 PRINTS Chloride channel signature 475 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere06g0002 743 PRINTS Chloride channel signature 430 450 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere06g0002 743 PRINTS Chloride channel signature 493 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dere06g0002 743 CDD CBS_pair_voltage-gated_CLC_euk_bac 605 730 - -
Dere06g0002 743 MobiDBLite consensus disorder prediction 32 49 - -
Dere06g0002 743 Pfam CBS domain 601 651 IPR000644 -
Dere06g0002 743 SUPERFAMILY Clc chloride channel 102 528 IPR014743 -
Dere06g0002 743 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 91 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0002 Dere-ChrDere06 41153 54936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0002 28 272 Ion Channels AT3G27170 26.241 3.25e-08 55.1