Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2947 ATGGAAAAGGTTGCTACGCAAGTGGCGGCTCCCATTTTCGTACACCAATCTTTATCTAGTCGATTTTGTGAGTCACCTGCCATGGCAAAGAAGCGTGATCTGTCCTGCGCAGCCTCCCCCAACTTTCTTCACCAACAGTTACAAAACCCTAGCGACAACTGGAACCCAAAGGGATGGGACTGGGACACTGTCAGATTCGTTGCCAAACCCTTGGACACTGACATGCTCCGATTGGGGACTCCCACAACCACCCCAAAAGACCATCGCCTTCCAACTGTTACCAATTTCAAAAAGAGCTCTGCTATCATAGATGATGAGCAAGAAGAAAGCCTTCGTTTGAATCTCGGTGGTCGCTCGGTCTTCAATTCGGTGCAGGAACCCATTTCACGCCCTAACAAAAGGCTACGTTCTGGCTCACCTAATGGACCCTCTTATCCTATGTGTCAGGTAGATAACTGTAAGGAAGATCTCTCCAATGCCAAAGACTATCATCGACGACATAAAGTTTGTGAGCTTCACAGCAAATCTTCTAAAGCTCTTGTCGCTAACCAATTGCAACGATTCTGCCAGCAGTGTAGCAGATTTCACCCTCTGGCAGAGTTTGATGAAGGGAAGAGAAGTTGTAGGCGTAGACTTGCTGGGCATAACCGTCGAAGAAGAAAAACTCAACCAGAAGATGTTACCTCACGGCTCCTCCCTGGAAACCTGGATAGTACAACATCTAGCAATTTTGATATTGTTAACTTGTTGACAACAATAGCTCGAGCACAAGGGAAATTTGGGGAAAGAAGTAAAATCAGTTCACAACTTCCAGAGAGAGACCAGCTTGTTCAGATTATTAATAGGATAAATTCATTACCTTTGCCATCAGACCTTGCTGCAAAGTTGGCTAATGTTGGAAATTTATGTGTGAGCGTTCCTGGGCAAACTTCTTCAGATCATCATGACAAATTGAACCAGAACAAATCTTCCCCATCAACTATGGACTTACTTGCAGTTCTTTCTGCAACTCTACCAGCATCTGCTCCTGATGCCATTGCTTTACTCTCTCAAAAAAGCAGCCACAGTAGTGACAGTGAGAAATCTAGGACAAGTGGTGCTGACCAAGCAACCGAACCTGGTCTACTGTCAAGACAACCACTGGAATTTACTTCAATTGGAGCAGAAAGAAGTAGTAGCAGTTACCAGTCTCCTGTTGAAGATTCAGATTGCCAGGTTCAAGAGACTCCAATTAATTTACCACTGCAGCTTTTTAGTTCGTCTCCAGAAGATGAAAGCCTGCCAAAAATGCCATGTTCACGGAAGTATCTCTCATCTGACAGTAGTAATCCTGTGGAAGAGATGTCACCATCATCTTCTCCTTCTTTGGTACGGAAGCATTTTGCTTTGCAGAGTGTAATTGAAGGTATCAAGTCAGACAAAATTTCAGTTGGAAGAGTGGTCAATGCTCATAAGGAAGCCAGCCAAAGTGATGACTGTAATGTTTCTCTTGATCTTTTTAGAAGGTTAGATAGCAGAGTCCAACCTAGTTCAGTGCAAAGTGTTCCATTTCAAGCTGGGTACACATCTTCAGGATCTGATCATTCACCTCCTAGTTTGACTTCAGATGCTCAGGATCGTACTGGTCGAATAATGTTTAAACTATTTGACAAGGATCCTAGTCATTTCCCAGGAACGCTGCGAACTCAGATTTACAATTGGCTTTCTAATAGCCCTTCGGAGATGGAGAGCTACATAAGGCCTGGCTGTGTGATCCTATCAGTTTATGTTTCAATGTCATCTGCTGCCTGGGAGCACCTAGAAGAAAATTTTCTTCAACATGTTCACACTTTGATTCAAACTTCTGATTCTGAGTTTTGGAGAAATGGGAGGTTTTTAGTTCATGCTGGTCGTCAGTTAGCGTCACATAAAGATGGAAAGATTCGCTTATGCAGAACTTGGAGAACATGGAGGACTCCAGAGTTGATATCTGTCTCCCCTTTGGCGATTGTTGAGGGACAAGAAACCTCAATTTCACTGAAGGGTAGAAATCTGTCAACTCCTGGCACCAAAATTCATTGTACAAATGTAAGTTGTTACACATCAGAGGAAGTTATAAGGTCTGTTTATTCCGGCATGACATTTGATGAGATAAGATTGGGTGGATTTAAAGTTCACAATGCATCTCCTGGTGTTCTTGGTCGCTGTTTCATTGAGGTTGAGAATGGTTTCAAGGGTAACAGTTTTCCTGTGATAATAGCTGATGCTACCATTTGTAAGGAATTGCAATTACTTGAGTCTGAGTTTGATATGGAGGTGAAATTATGTGATGCCATTGACGAAGAGCATGCTTATGAGTTTGCAAAAACTGGGTCAAGGGAGGAGGTTTTGCTCTTTCTGAATGAGCTTGGCTGGCTATTCCAAAGAAAAAGGTCCTCATGTGCACAAGAGCTTCCAGATTATTCACTTGACAGGTTCAAATTTTTACTCACATTTTCTGTGGAAAGAAACTGTTTAATGTTGGTCCAAACCCTTATGGATGTGCTGGTGGAAGAACACTTGGAAGGGGAATGGCTGTCCAAGGGGTCAGTGGAGATGCTGAATGCAATTCAACTCTTAAACCGGGCTGTGAAAAGAAGGTATATAAAAATGGTTGACTTGCTCATCCACTATTCTACACCTGGCAAAAATGACACATCCAGGAAATATGTATTTCCGCCTAATCTTGAGGGACCTGCTGGTATTACTCCCTTGCATTTGGCTGCTTGCACATCAGGTTGTGAGGGTGTAATTGACTCTCTGACAAATGATCCACAAGAGATTGGATTGAAGTGCTGGGAATCCCTTGTGGATGCAAATGGGCAGACTCCTTATACCTATGCCATGATGAGAAATAATCACTCTTATAACATGCTGATTGCTCGTAAACTTGCTGATAGAGAAAAAGGTCAAGTTTCAGTGACAATTGAAACCGAGATAGAGCAACCATCGCTGAGAATTGAGCATAAATCGAGGTCAAGTGACAAAGTGGGACAAGGTCAGAGATCTTGTAATAAATGTGCGACTGCAGCAATGCACTACAACATGAGAGTTCTGGGTCCGCAAGGACTGCTTCACCGTCCCTACATTCATTCAGTGCTTGCTATTGCTGCCGTTTGTGTATGTGTTTGTCTATTCTTCCGTGGAGCCCCTGAAATAGGTTCGGTTGCTCCCTTTAAGTGGGAAAATTTGGATTATGGCACAGTTTAA 3228 0.4312 MEKVATQVAAPIFVHQSLSSRFCESPAMAKKRDLSCAASPNFLHQQLQNPSDNWNPKGWDWDTVRFVAKPLDTDMLRLGTPTTTPKDHRLPTVTNFKKSSAIIDDEQEESLRLNLGGRSVFNSVQEPISRPNKRLRSGSPNGPSYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVANQLQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSRLLPGNLDSTTSSNFDIVNLLTTIARAQGKFGERSKISSQLPERDQLVQIINRINSLPLPSDLAAKLANVGNLCVSVPGQTSSDHHDKLNQNKSSPSTMDLLAVLSATLPASAPDAIALLSQKSSHSSDSEKSRTSGADQATEPGLLSRQPLEFTSIGAERSSSSYQSPVEDSDCQVQETPINLPLQLFSSSPEDESLPKMPCSRKYLSSDSSNPVEEMSPSSSPSLVRKHFALQSVIEGIKSDKISVGRVVNAHKEASQSDDCNVSLDLFRRLDSRVQPSSVQSVPFQAGYTSSGSDHSPPSLTSDAQDRTGRIMFKLFDKDPSHFPGTLRTQIYNWLSNSPSEMESYIRPGCVILSVYVSMSSAAWEHLEENFLQHVHTLIQTSDSEFWRNGRFLVHAGRQLASHKDGKIRLCRTWRTWRTPELISVSPLAIVEGQETSISLKGRNLSTPGTKIHCTNVSCYTSEEVIRSVYSGMTFDEIRLGGFKVHNASPGVLGRCFIEVENGFKGNSFPVIIADATICKELQLLESEFDMEVKLCDAIDEEHAYEFAKTGSREEVLLFLNELGWLFQRKRSSCAQELPDYSLDRFKFLLTFSVERNCLMLVQTLMDVLVEEHLEGEWLSKGSVEMLNAIQLLNRAVKRRYIKMVDLLIHYSTPGKNDTSRKYVFPPNLEGPAGITPLHLAACTSGCEGVIDSLTNDPQEIGLKCWESLVDANGQTPYTYAMMRNNHSYNMLIARKLADREKGQVSVTIETEIEQPSLRIEHKSRSSDKVGQGQRSCNKCATAAMHYNMRVLGPQGLLHRPYIHSVLAIAAVCVCVCLFFRGAPEIGSVAPFKWENLDYGTV 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2947 1075 Gene3D - 138 209 IPR036893 GO:0003677|GO:0005634
Dere05g2947 1075 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Dere05g2947 1075 SUPERFAMILY Ankyrin repeat 865 962 IPR036770 -
Dere05g2947 1075 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 859 IPR044817 GO:0003677
Dere05g2947 1075 Gene3D - 822 997 IPR036770 -
Dere05g2947 1075 MobiDBLite consensus disorder prediction 350 380 - -
Dere05g2947 1075 MobiDBLite consensus disorder prediction 435 453 - -
Dere05g2947 1075 Pfam SBP domain 148 221 IPR004333 GO:0003677
Dere05g2947 1075 MobiDBLite consensus disorder prediction 511 537 - -
Dere05g2947 1075 MobiDBLite consensus disorder prediction 417 453 - -
Dere05g2947 1075 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Dere05g2947 1075 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Dere05g2947 1075 MobiDBLite consensus disorder prediction 212 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2947 Dere-ChrDere05 39901277 39906247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2947 1 1075 SBP-box Gene Family AT1G20980 53.071 0.0 1027
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere05g2947 SBP 1.7e-29 No_clan