Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2945 ATGGTTTCGCTTCGTTCACTAGTTGCTCCTCCTACCTCTGTTTCCTCTTCTTCCTCCTGTTTCTTCAACGGCTTTTCCTTTCTGTATTTTGCCCCCAAACCCAGAAACAACTTGATAATCAAGCATAAACACCCATCTGTCTTCAAAGCCTCGTGGCAAGAGCTTGCCGGAGTGCTAGTGTTCTCGGCGATTCCTTTCACTGCTGTAAAAGCTATAGCTAATAGTCCATTGGGGCACTCGCTTCAGAGGAGACTGCAAGAGAGAAAAAAAATTGCGGCAGATAACTCGGCCCTATTTAAGGACTTAGCCCAGAAAGCCAGAAAAGAGAGCTTTTGGTATGGAAAAGACCGGCCTTGTTGGCTTGGTCCTATTCCATATGAATATCCAGCGTATCTTACTGGAGAACTTCCTGGGGATTATGGATTTGACATTGCTGGGCTTGGCAAGGATCCTGCGGCTCTGCAGAAATACTTCAACTTCGAAATATTGCATGCTCGGTGGGCTATGCTTGCATCTGTTGGTGCACTGGTTCCTGAAATATTAGACCTCTCTGAGGCCTTTCACTTTGTTGAACCCATCTGGTGGCGCGTTGGCTATTCAAAGCTCAAGGGAGATACTCTAGACTACCTTGGGATCCCAGGACTCCACTTAGCTGGAAGCCAAGGAGTTGTTGTAATTGCTATATGCCAAGCGCTCCTCATGGTTGGACCAGAGTATGCTAGATATTGTGGAATTACAGCATTGGAACCTCTAGGAATATATCTGCCTGGTGATATAAATTATCCAGGAGGTGCATTATTTGATCCTCTGAATCTGTCTAATGATCCTGAGGCTTTTGAGGATCTCAAGGTGAAAGAAATTAAAAATGGACGCTTAGCAATGATTGCGTGGTTGGGATTTTACACTCAAGCAGCTCTGACGGGTAAAGGTCCTGTGCAGAACCTTCTTGATCACATCTCGGATCCTTTGCACAATAACATTTTTTGCATGCTCAGCTTCACGAAGCTAGGTACGTGA 1017 0.4543 MVSLRSLVAPPTSVSSSSSCFFNGFSFLYFAPKPRNNLIIKHKHPSVFKASWQELAGVLVFSAIPFTAVKAIANSPLGHSLQRRLQERKKIAADNSALFKDLAQKARKESFWYGKDRPCWLGPIPYEYPAYLTGELPGDYGFDIAGLGKDPAALQKYFNFEILHARWAMLASVGALVPEILDLSEAFHFVEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVVVIAICQALLMVGPEYARYCGITALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEDLKVKEIKNGRLAMIAWLGFYTQAALTGKGPVQNLLDHISDPLHNNIFCMLSFTKLGT 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2945 338 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Dere05g2945 338 Pfam Chlorophyll A-B binding protein 129 304 IPR022796 -
Dere05g2945 338 Gene3D Chlorophyll a/b binding protein domain 119 331 - -
Dere05g2945 338 SUPERFAMILY Chlorophyll a-b binding protein 111 331 - -
Dere05g2945 338 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 94 330 IPR001344 GO:0009765|GO:0016020
Dere05g2945 338 FunFam Chlorophyll a-b binding protein, chloroplastic 119 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2945 Dere-ChrDere05 39865522 39870903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2945 33 332 Chloroplast and Mitochondria Gene Families AT1G76570 77.667 1.11e-178 496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2945 05 39865522 39870903 Dere05g2945 05 39865522 39870903 ECH